miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22871 3' -58 NC_005137.2 + 42668 0.68 0.614684
Target:  5'- ---uGGCGCGACGCCaa-GCGCGCAAu -3'
miRNA:   3'- cgugUCGUGUUGCGGcggCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 46682 0.7 0.503313
Target:  5'- aGCAC-GCGCcaguAUGCuCGCaCGCGCGCAAc -3'
miRNA:   3'- -CGUGuCGUGu---UGCG-GCG-GCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 63008 0.7 0.553147
Target:  5'- cCAUGGUGCGGCGCCGgCGUGUcgGCAAg -3'
miRNA:   3'- cGUGUCGUGUUGCGGCgGCGCG--UGUU- -5'
22871 3' -58 NC_005137.2 + 57422 0.69 0.563303
Target:  5'- uGCGcCGGCuGCAAagcCGUCGUCGCGUACGAa -3'
miRNA:   3'- -CGU-GUCG-UGUU---GCGGCGGCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 106710 0.69 0.563303
Target:  5'- cCGCAGcCGCaAACGCCGCCGUuugauuGCGCc- -3'
miRNA:   3'- cGUGUC-GUG-UUGCGGCGGCG------CGUGuu -5'
22871 3' -58 NC_005137.2 + 130863 0.69 0.563303
Target:  5'- cGCGCAGC-CcGCGCCugaauuguacGCCGCGgACGc -3'
miRNA:   3'- -CGUGUCGuGuUGCGG----------CGGCGCgUGUu -5'
22871 3' -58 NC_005137.2 + 6988 0.69 0.573508
Target:  5'- cGCACAcGgACgAGCgGUCGCCGgGCACAAc -3'
miRNA:   3'- -CGUGU-CgUG-UUG-CGGCGGCgCGUGUU- -5'
22871 3' -58 NC_005137.2 + 125055 0.69 0.583756
Target:  5'- cGgGCGGCGCGGCGCCGgauCUGaacgGCGCAAa -3'
miRNA:   3'- -CgUGUCGUGUUGCGGC---GGCg---CGUGUU- -5'
22871 3' -58 NC_005137.2 + 88490 0.69 0.594039
Target:  5'- cGCGCaauuGGaCGgAAUGUCGCCGCGCAgCAAg -3'
miRNA:   3'- -CGUG----UC-GUgUUGCGGCGGCGCGU-GUU- -5'
22871 3' -58 NC_005137.2 + 110803 0.71 0.493574
Target:  5'- cGCGCuuucGCAauCGACGCCGCCcgccgaCGCGCAAg -3'
miRNA:   3'- -CGUGu---CGU--GUUGCGGCGGc-----GCGUGUU- -5'
22871 3' -58 NC_005137.2 + 110710 0.71 0.483922
Target:  5'- cGCGCGuGCGCAACGgUG-UGCGCGCAGa -3'
miRNA:   3'- -CGUGU-CGUGUUGCgGCgGCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 31670 0.71 0.483922
Target:  5'- uGCAUAGCggACGACaCCGCCGCGUg--- -3'
miRNA:   3'- -CGUGUCG--UGUUGcGGCGGCGCGuguu -5'
22871 3' -58 NC_005137.2 + 77426 0.74 0.328743
Target:  5'- cCACAGCACAaguACGCaGCCagacGCGCGCAAc -3'
miRNA:   3'- cGUGUCGUGU---UGCGgCGG----CGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 55419 0.73 0.344057
Target:  5'- cCACGcGCACGGCGCCGCcCGCGUcCGc -3'
miRNA:   3'- cGUGU-CGUGUUGCGGCG-GCGCGuGUu -5'
22871 3' -58 NC_005137.2 + 46043 0.73 0.367975
Target:  5'- -aACGGCGCcaacgagguuAUGCCGCCGCuGCACAGc -3'
miRNA:   3'- cgUGUCGUGu---------UGCGGCGGCG-CGUGUU- -5'
22871 3' -58 NC_005137.2 + 2002 0.72 0.410304
Target:  5'- uGCACAGCuCGugcACGCUGCgGCGCAgAc -3'
miRNA:   3'- -CGUGUCGuGU---UGCGGCGgCGCGUgUu -5'
22871 3' -58 NC_005137.2 + 96421 0.72 0.410304
Target:  5'- cGCGCGGCGacGCGcCCGCCGCGuUGCGu -3'
miRNA:   3'- -CGUGUCGUguUGC-GGCGGCGC-GUGUu -5'
22871 3' -58 NC_005137.2 + 37419 0.72 0.42537
Target:  5'- aGCGCcGCGCGuuuggaucagcgugAuUGCCGCCGCGCACc- -3'
miRNA:   3'- -CGUGuCGUGU--------------U-GCGGCGGCGCGUGuu -5'
22871 3' -58 NC_005137.2 + 43809 0.72 0.428063
Target:  5'- aGCgACGGCACGAgcaGCCGCC-CGCGCc- -3'
miRNA:   3'- -CG-UGUCGUGUUg--CGGCGGcGCGUGuu -5'
22871 3' -58 NC_005137.2 + 119686 0.71 0.459265
Target:  5'- gGCACGGCGCGcgcacacagcuuagcACGuacgcaucCCGCCGCGCAg-- -3'
miRNA:   3'- -CGUGUCGUGU---------------UGC--------GGCGGCGCGUguu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.