Results 1 - 20 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22871 | 3' | -58 | NC_005137.2 | + | 79677 | 0.66 | 0.775992 |
Target: 5'- gGCGCGGCggcggACGACcCCGCUGCGuUACu- -3' miRNA: 3'- -CGUGUCG-----UGUUGcGGCGGCGC-GUGuu -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 108150 | 0.66 | 0.747149 |
Target: 5'- cGgGCGGCgGCGGCGUCGguaUGCGCGCGc -3' miRNA: 3'- -CgUGUCG-UGUUGCGGCg--GCGCGUGUu -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 48764 | 0.66 | 0.784425 |
Target: 5'- -gGCGGCGCGaucguuggacgcgGCGCCGCacaGCGUguGCGg -3' miRNA: 3'- cgUGUCGUGU-------------UGCGGCGg--CGCG--UGUu -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 50166 | 0.66 | 0.766497 |
Target: 5'- -gGCAGCACAAacgucgaguccgUGUCGCCGUagaGCACu- -3' miRNA: 3'- cgUGUCGUGUU------------GCGGCGGCG---CGUGuu -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 93459 | 0.66 | 0.775992 |
Target: 5'- uGCAUacgGGCACggUGCgCGCCaGCGC-CGu -3' miRNA: 3'- -CGUG---UCGUGuuGCG-GCGG-CGCGuGUu -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 95160 | 0.66 | 0.756879 |
Target: 5'- cGCGCAcgaaugccaccGCACAuUGaCGCCGUGCACu- -3' miRNA: 3'- -CGUGU-----------CGUGUuGCgGCGGCGCGUGuu -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 123056 | 0.66 | 0.775992 |
Target: 5'- cGC-CGGU-CGAgGUCGCgGCGCGCAGc -3' miRNA: 3'- -CGuGUCGuGUUgCGGCGgCGCGUGUU- -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 88100 | 0.66 | 0.775992 |
Target: 5'- gGCAU-GCACGGCGaCGCCGUGUgaaaACAc -3' miRNA: 3'- -CGUGuCGUGUUGCgGCGGCGCG----UGUu -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 122376 | 0.66 | 0.785356 |
Target: 5'- -aAUAGCACGcccACGcCCGCCGCcuuaGCGCc- -3' miRNA: 3'- cgUGUCGUGU---UGC-GGCGGCG----CGUGuu -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 20970 | 0.66 | 0.756879 |
Target: 5'- -uGCGGCGC-GCGUuuUGCCGCGCuuGCAc -3' miRNA: 3'- cgUGUCGUGuUGCG--GCGGCGCG--UGUu -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 65773 | 0.66 | 0.747149 |
Target: 5'- aCACGuuuauGUGCAACGCCGaaGCGgACAAa -3' miRNA: 3'- cGUGU-----CGUGUUGCGGCggCGCgUGUU- -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 122315 | 0.66 | 0.775992 |
Target: 5'- aGCGCGaauaaugucuuGCACaAGCGUgGCCGCGCu--- -3' miRNA: 3'- -CGUGU-----------CGUG-UUGCGgCGGCGCGuguu -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 47225 | 0.66 | 0.785356 |
Target: 5'- -aACuGCGCugaagacuGCGCCGCUGCGguCGu -3' miRNA: 3'- cgUGuCGUGu-------UGCGGCGGCGCguGUu -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 57468 | 0.66 | 0.785356 |
Target: 5'- cGCAacgaGGcCACGACGCCGuUUGCGCGu-- -3' miRNA: 3'- -CGUg---UC-GUGUUGCGGC-GGCGCGUguu -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 74134 | 0.66 | 0.737315 |
Target: 5'- gGCACGGCACGG-GuuGCauuuaaaauUGUGCACAAu -3' miRNA: 3'- -CGUGUCGUGUUgCggCG---------GCGCGUGUU- -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 41319 | 0.66 | 0.747149 |
Target: 5'- uGCACGaauGCAaAACGCUGCUGgaGCACAc -3' miRNA: 3'- -CGUGU---CGUgUUGCGGCGGCg-CGUGUu -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 69001 | 0.66 | 0.747149 |
Target: 5'- -uGCAGCuugGCAGCGaCGCCauucugGCGCGCAu -3' miRNA: 3'- cgUGUCG---UGUUGCgGCGG------CGCGUGUu -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 80256 | 0.66 | 0.766497 |
Target: 5'- -gACGGCGCgAACGCCGUgGCGgAgGu -3' miRNA: 3'- cgUGUCGUG-UUGCGGCGgCGCgUgUu -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 35366 | 0.66 | 0.785356 |
Target: 5'- -aACAaCACGcagGCGCCGCUGUGgACAAu -3' miRNA: 3'- cgUGUcGUGU---UGCGGCGGCGCgUGUU- -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 117563 | 0.66 | 0.775992 |
Target: 5'- uGUAcCGGCAaaguGCGCCGCCG-GUGCGg -3' miRNA: 3'- -CGU-GUCGUgu--UGCGGCGGCgCGUGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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