Results 1 - 20 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22871 | 3' | -58 | NC_005137.2 | + | 97231 | 1.07 | 0.001695 |
Target: 5'- gGCACAGCACAACGCCGCCGCGCACAAu -3' miRNA: 3'- -CGUGUCGUGUUGCGGCGGCGCGUGUU- -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 6036 | 0.77 | 0.208261 |
Target: 5'- aCGCAGCGCAGCGCCccaucaccggcGCCGCGUucaucGCAAc -3' miRNA: 3'- cGUGUCGUGUUGCGG-----------CGGCGCG-----UGUU- -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 100053 | 0.76 | 0.24096 |
Target: 5'- cGCGCGGCGCGuucagcaugcuuuGUGCCGCgGCGCGCGg -3' miRNA: 3'- -CGUGUCGUGU-------------UGCGGCGgCGCGUGUu -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 55033 | 0.76 | 0.235709 |
Target: 5'- uGCGCcguGCAcCAACGCgCGCCGCGuCACGAc -3' miRNA: 3'- -CGUGu--CGU-GUUGCG-GCGGCGC-GUGUU- -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 112755 | 0.74 | 0.313939 |
Target: 5'- -aACGGaCGCGGCGCCGCagucgaacgaCGCGCACAc -3' miRNA: 3'- cgUGUC-GUGUUGCGGCG----------GCGCGUGUu -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 77426 | 0.74 | 0.328743 |
Target: 5'- cCACAGCACAaguACGCaGCCagacGCGCGCAAc -3' miRNA: 3'- cGUGUCGUGU---UGCGgCGG----CGCGUGUU- -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 15245 | 0.74 | 0.321277 |
Target: 5'- aGCAgGGaa-AACGCCGCgGCGCGCAc -3' miRNA: 3'- -CGUgUCgugUUGCGGCGgCGCGUGUu -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 51327 | 0.74 | 0.336336 |
Target: 5'- aCGCAGCGgGGucgucCGCCGCCGCGCcuGCAc -3' miRNA: 3'- cGUGUCGUgUU-----GCGGCGGCGCG--UGUu -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 18596 | 0.74 | 0.306728 |
Target: 5'- cGUACuuGCACAAUgGCgCGCCGUGCGCGAu -3' miRNA: 3'- -CGUGu-CGUGUUG-CG-GCGGCGCGUGUU- -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 22851 | 0.74 | 0.336336 |
Target: 5'- gGCGCGcGCAuacCGACGCCGCCGcCGCcCGAc -3' miRNA: 3'- -CGUGU-CGU---GUUGCGGCGGC-GCGuGUU- -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 30945 | 0.73 | 0.376198 |
Target: 5'- cCGCGGCACAaagcaugcugaACG-CGCCGCGCGCc- -3' miRNA: 3'- cGUGUCGUGU-----------UGCgGCGGCGCGUGuu -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 18767 | 0.73 | 0.379521 |
Target: 5'- aGCAC-GCGgAACGCCGCguucaaucaucacugCGCGCACGu -3' miRNA: 3'- -CGUGuCGUgUUGCGGCG---------------GCGCGUGUu -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 97264 | 0.73 | 0.359877 |
Target: 5'- uGCGuuuuCGGUACAACGCCGCCGCaGUAg-- -3' miRNA: 3'- -CGU----GUCGUGUUGCGGCGGCG-CGUguu -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 35372 | 0.73 | 0.385385 |
Target: 5'- cGCACGGCGCAcgcggaaaaaACGacucguuaaacagcaCGUCGCGCACAGu -3' miRNA: 3'- -CGUGUCGUGU----------UGCg--------------GCGGCGCGUGUU- -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 110038 | 0.73 | 0.359877 |
Target: 5'- aGCGCGGCAaAACGCgCGCCGCagGCAgCAGa -3' miRNA: 3'- -CGUGUCGUgUUGCG-GCGGCG--CGU-GUU- -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 34587 | 0.73 | 0.384543 |
Target: 5'- aCGCGGCGgGcGCGUCGCCGCGCGgGu -3' miRNA: 3'- cGUGUCGUgU-UGCGGCGGCGCGUgUu -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 46043 | 0.73 | 0.367975 |
Target: 5'- -aACGGCGCcaacgagguuAUGCCGCCGCuGCACAGc -3' miRNA: 3'- cgUGUCGUGu---------UGCGGCGGCG-CGUGUU- -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 55419 | 0.73 | 0.344057 |
Target: 5'- cCACGcGCACGGCGCCGCcCGCGUcCGc -3' miRNA: 3'- cGUGU-CGUGUUGCGGCG-GCGCGuGUu -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 113706 | 0.73 | 0.367975 |
Target: 5'- cGCACAGCGCGucaAUGUC-CUGCGCAUAAc -3' miRNA: 3'- -CGUGUCGUGU---UGCGGcGGCGCGUGUU- -5' |
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22871 | 3' | -58 | NC_005137.2 | + | 37419 | 0.72 | 0.42537 |
Target: 5'- aGCGCcGCGCGuuuggaucagcgugAuUGCCGCCGCGCACc- -3' miRNA: 3'- -CGUGuCGUGU--------------U-GCGGCGGCGCGUGuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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