miRNA display CGI


Results 21 - 40 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22871 3' -58 NC_005137.2 + 123814 0.72 0.434385
Target:  5'- -gACGGCACGcgccgguucgaaauGCGCUGCaaCGCGCGCGAu -3'
miRNA:   3'- cgUGUCGUGU--------------UGCGGCG--GCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 99765 0.72 0.416468
Target:  5'- aGCGC-GCACGACGCgGCCauguucaagcugguGUGCGCGAc -3'
miRNA:   3'- -CGUGuCGUGUUGCGgCGG--------------CGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 96421 0.72 0.410304
Target:  5'- cGCGCGGCGacGCGcCCGCCGCGuUGCGu -3'
miRNA:   3'- -CGUGUCGUguUGC-GGCGGCGC-GUGUu -5'
22871 3' -58 NC_005137.2 + 2002 0.72 0.410304
Target:  5'- uGCACAGCuCGugcACGCUGCgGCGCAgAc -3'
miRNA:   3'- -CGUGUCGuGU---UGCGGCGgCGCGUgUu -5'
22871 3' -58 NC_005137.2 + 86084 0.72 0.39301
Target:  5'- aGCACGGCGuCAugGUaCGCCGCG-ACGAg -3'
miRNA:   3'- -CGUGUCGU-GUugCG-GCGGCGCgUGUU- -5'
22871 3' -58 NC_005137.2 + 37419 0.72 0.42537
Target:  5'- aGCGCcGCGCGuuuggaucagcgugAuUGCCGCCGCGCACc- -3'
miRNA:   3'- -CGUGuCGUGU--------------U-GCGGCGGCGCGUGuu -5'
22871 3' -58 NC_005137.2 + 43809 0.72 0.428063
Target:  5'- aGCgACGGCACGAgcaGCCGCC-CGCGCc- -3'
miRNA:   3'- -CG-UGUCGUGUUg--CGGCGGcGCGUGuu -5'
22871 3' -58 NC_005137.2 + 22419 0.71 0.446268
Target:  5'- cGCACcacguaaaAGCACAcgggcGCGCCGCCGaucaCGUACAu -3'
miRNA:   3'- -CGUG--------UCGUGU-----UGCGGCGGC----GCGUGUu -5'
22871 3' -58 NC_005137.2 + 110710 0.71 0.483922
Target:  5'- cGCGCGuGCGCAACGgUG-UGCGCGCAGa -3'
miRNA:   3'- -CGUGU-CGUGUUGCgGCgGCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 31670 0.71 0.483922
Target:  5'- uGCAUAGCggACGACaCCGCCGCGUg--- -3'
miRNA:   3'- -CGUGUCG--UGUUGcGGCGGCGCGuguu -5'
22871 3' -58 NC_005137.2 + 119686 0.71 0.459265
Target:  5'- gGCACGGCGCGcgcacacagcuuagcACGuacgcaucCCGCCGCGCAg-- -3'
miRNA:   3'- -CGUGUCGUGU---------------UGC--------GGCGGCGCGUguu -5'
22871 3' -58 NC_005137.2 + 110803 0.71 0.493574
Target:  5'- cGCGCuuucGCAauCGACGCCGCCcgccgaCGCGCAAg -3'
miRNA:   3'- -CGUGu---CGU--GUUGCGGCGGc-----GCGUGUU- -5'
22871 3' -58 NC_005137.2 + 11579 0.71 0.474361
Target:  5'- -aACAauuUGCAACGCUGCCGUGCGCAc -3'
miRNA:   3'- cgUGUc--GUGUUGCGGCGGCGCGUGUu -5'
22871 3' -58 NC_005137.2 + 60410 0.71 0.455531
Target:  5'- --uCAGCGCAACaaaaaGCCGCC-CGCGCAGc -3'
miRNA:   3'- cguGUCGUGUUG-----CGGCGGcGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 26299 0.71 0.483922
Target:  5'- cGUACGcGUACAACGgCGgCGCGCugGAc -3'
miRNA:   3'- -CGUGU-CGUGUUGCgGCgGCGCGugUU- -5'
22871 3' -58 NC_005137.2 + 20283 0.7 0.503313
Target:  5'- cGCACaAGCGCucuGCGCgcacaccguugCGCaCGCGCGCAu -3'
miRNA:   3'- -CGUG-UCGUGu--UGCG-----------GCG-GCGCGUGUu -5'
22871 3' -58 NC_005137.2 + 81317 0.7 0.503313
Target:  5'- -aGCGGCGCGuaguuaCCGCCGCGCGCc- -3'
miRNA:   3'- cgUGUCGUGUugc---GGCGGCGCGUGuu -5'
22871 3' -58 NC_005137.2 + 128520 0.7 0.503313
Target:  5'- --cCAGCACcAUGCCGCaCGCgGCGCAu -3'
miRNA:   3'- cguGUCGUGuUGCGGCG-GCG-CGUGUu -5'
22871 3' -58 NC_005137.2 + 128975 0.7 0.512149
Target:  5'- aGCAaauaaGGCGCGaccuaaauagucuGCGCCGCagCGUGCACGAg -3'
miRNA:   3'- -CGUg----UCGUGU-------------UGCGGCG--GCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 99358 0.7 0.513135
Target:  5'- uGCACAGCGuggucGCGuCCGCgCGCGUGCAc -3'
miRNA:   3'- -CGUGUCGUgu---UGC-GGCG-GCGCGUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.