miRNA display CGI


Results 21 - 40 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22871 3' -58 NC_005137.2 + 117563 0.66 0.775992
Target:  5'- uGUAcCGGCAaaguGCGCCGCCG-GUGCGg -3'
miRNA:   3'- -CGU-GUCGUgu--UGCGGCGGCgCGUGUu -5'
22871 3' -58 NC_005137.2 + 100129 0.66 0.775992
Target:  5'- gGCuGCGGCGCAuugGCGUUcgGUCGUGCACGc -3'
miRNA:   3'- -CG-UGUCGUGU---UGCGG--CGGCGCGUGUu -5'
22871 3' -58 NC_005137.2 + 27186 0.66 0.766497
Target:  5'- uGC-CGuGCAcCAAC-CCGCCGCcGCACAc -3'
miRNA:   3'- -CGuGU-CGU-GUUGcGGCGGCG-CGUGUu -5'
22871 3' -58 NC_005137.2 + 109510 0.66 0.736327
Target:  5'- uGCACAaauauauGCACAA-GUCGCUGCGUGCc- -3'
miRNA:   3'- -CGUGU-------CGUGUUgCGGCGGCGCGUGuu -5'
22871 3' -58 NC_005137.2 + 65773 0.66 0.747149
Target:  5'- aCACGuuuauGUGCAACGCCGaaGCGgACAAa -3'
miRNA:   3'- cGUGU-----CGUGUUGCGGCggCGCgUGUU- -5'
22871 3' -58 NC_005137.2 + 5893 0.66 0.775992
Target:  5'- -aGCGGCGCGGC-CCGCCGC-UugAGu -3'
miRNA:   3'- cgUGUCGUGUUGcGGCGGCGcGugUU- -5'
22871 3' -58 NC_005137.2 + 74134 0.66 0.737315
Target:  5'- gGCACGGCACGG-GuuGCauuuaaaauUGUGCACAAu -3'
miRNA:   3'- -CGUGUCGUGUUgCggCG---------GCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 69001 0.66 0.747149
Target:  5'- -uGCAGCuugGCAGCGaCGCCauucugGCGCGCAu -3'
miRNA:   3'- cgUGUCG---UGUUGCgGCGG------CGCGUGUu -5'
22871 3' -58 NC_005137.2 + 41319 0.66 0.747149
Target:  5'- uGCACGaauGCAaAACGCUGCUGgaGCACAc -3'
miRNA:   3'- -CGUGU---CGUgUUGCGGCGGCg-CGUGUu -5'
22871 3' -58 NC_005137.2 + 80256 0.66 0.766497
Target:  5'- -gACGGCGCgAACGCCGUgGCGgAgGu -3'
miRNA:   3'- cgUGUCGUG-UUGCGGCGgCGCgUgUu -5'
22871 3' -58 NC_005137.2 + 50166 0.66 0.766497
Target:  5'- -gGCAGCACAAacgucgaguccgUGUCGCCGUagaGCACu- -3'
miRNA:   3'- cgUGUCGUGUU------------GCGGCGGCG---CGUGuu -5'
22871 3' -58 NC_005137.2 + 95160 0.66 0.756879
Target:  5'- cGCGCAcgaaugccaccGCACAuUGaCGCCGUGCACu- -3'
miRNA:   3'- -CGUGU-----------CGUGUuGCgGCGGCGCGUGuu -5'
22871 3' -58 NC_005137.2 + 20970 0.66 0.756879
Target:  5'- -uGCGGCGC-GCGUuuUGCCGCGCuuGCAc -3'
miRNA:   3'- cgUGUCGUGuUGCG--GCGGCGCG--UGUu -5'
22871 3' -58 NC_005137.2 + 88100 0.66 0.775992
Target:  5'- gGCAU-GCACGGCGaCGCCGUGUgaaaACAc -3'
miRNA:   3'- -CGUGuCGUGUUGCgGCGGCGCG----UGUu -5'
22871 3' -58 NC_005137.2 + 108150 0.66 0.747149
Target:  5'- cGgGCGGCgGCGGCGUCGguaUGCGCGCGc -3'
miRNA:   3'- -CgUGUCG-UGUUGCGGCg--GCGCGUGUu -5'
22871 3' -58 NC_005137.2 + 124962 0.67 0.717376
Target:  5'- aCGCGGCGCcggugauggGGCGCugCGCUGCGUugGAa -3'
miRNA:   3'- cGUGUCGUG---------UUGCG--GCGGCGCGugUU- -5'
22871 3' -58 NC_005137.2 + 98368 0.67 0.717376
Target:  5'- uGCGcCGGUuuGGCGCCGUCGCG-ACGGg -3'
miRNA:   3'- -CGU-GUCGugUUGCGGCGGCGCgUGUU- -5'
22871 3' -58 NC_005137.2 + 72121 0.67 0.69714
Target:  5'- uUACGGCGuacguucgccUAACGCUGCCG-GCACGu -3'
miRNA:   3'- cGUGUCGU----------GUUGCGGCGGCgCGUGUu -5'
22871 3' -58 NC_005137.2 + 9501 0.67 0.727388
Target:  5'- -aACGGCGgGGCuGCCGCCGCuuguCACGu -3'
miRNA:   3'- cgUGUCGUgUUG-CGGCGGCGc---GUGUu -5'
22871 3' -58 NC_005137.2 + 34863 0.67 0.717376
Target:  5'- cGCACGGCggGCAACGCga-UGCGCAUGGg -3'
miRNA:   3'- -CGUGUCG--UGUUGCGgcgGCGCGUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.