miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22871 3' -58 NC_005137.2 + 97231 1.07 0.001695
Target:  5'- gGCACAGCACAACGCCGCCGCGCACAAu -3'
miRNA:   3'- -CGUGUCGUGUUGCGGCGGCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 6036 0.77 0.208261
Target:  5'- aCGCAGCGCAGCGCCccaucaccggcGCCGCGUucaucGCAAc -3'
miRNA:   3'- cGUGUCGUGUUGCGG-----------CGGCGCG-----UGUU- -5'
22871 3' -58 NC_005137.2 + 55033 0.76 0.235709
Target:  5'- uGCGCcguGCAcCAACGCgCGCCGCGuCACGAc -3'
miRNA:   3'- -CGUGu--CGU-GUUGCG-GCGGCGC-GUGUU- -5'
22871 3' -58 NC_005137.2 + 100053 0.76 0.24096
Target:  5'- cGCGCGGCGCGuucagcaugcuuuGUGCCGCgGCGCGCGg -3'
miRNA:   3'- -CGUGUCGUGU-------------UGCGGCGgCGCGUGUu -5'
22871 3' -58 NC_005137.2 + 18596 0.74 0.306728
Target:  5'- cGUACuuGCACAAUgGCgCGCCGUGCGCGAu -3'
miRNA:   3'- -CGUGu-CGUGUUG-CG-GCGGCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 112755 0.74 0.313939
Target:  5'- -aACGGaCGCGGCGCCGCagucgaacgaCGCGCACAc -3'
miRNA:   3'- cgUGUC-GUGUUGCGGCG----------GCGCGUGUu -5'
22871 3' -58 NC_005137.2 + 15245 0.74 0.321277
Target:  5'- aGCAgGGaa-AACGCCGCgGCGCGCAc -3'
miRNA:   3'- -CGUgUCgugUUGCGGCGgCGCGUGUu -5'
22871 3' -58 NC_005137.2 + 77426 0.74 0.328743
Target:  5'- cCACAGCACAaguACGCaGCCagacGCGCGCAAc -3'
miRNA:   3'- cGUGUCGUGU---UGCGgCGG----CGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 22851 0.74 0.336336
Target:  5'- gGCGCGcGCAuacCGACGCCGCCGcCGCcCGAc -3'
miRNA:   3'- -CGUGU-CGU---GUUGCGGCGGC-GCGuGUU- -5'
22871 3' -58 NC_005137.2 + 51327 0.74 0.336336
Target:  5'- aCGCAGCGgGGucgucCGCCGCCGCGCcuGCAc -3'
miRNA:   3'- cGUGUCGUgUU-----GCGGCGGCGCG--UGUu -5'
22871 3' -58 NC_005137.2 + 55419 0.73 0.344057
Target:  5'- cCACGcGCACGGCGCCGCcCGCGUcCGc -3'
miRNA:   3'- cGUGU-CGUGUUGCGGCG-GCGCGuGUu -5'
22871 3' -58 NC_005137.2 + 97264 0.73 0.359877
Target:  5'- uGCGuuuuCGGUACAACGCCGCCGCaGUAg-- -3'
miRNA:   3'- -CGU----GUCGUGUUGCGGCGGCG-CGUguu -5'
22871 3' -58 NC_005137.2 + 110038 0.73 0.359877
Target:  5'- aGCGCGGCAaAACGCgCGCCGCagGCAgCAGa -3'
miRNA:   3'- -CGUGUCGUgUUGCG-GCGGCG--CGU-GUU- -5'
22871 3' -58 NC_005137.2 + 113706 0.73 0.367975
Target:  5'- cGCACAGCGCGucaAUGUC-CUGCGCAUAAc -3'
miRNA:   3'- -CGUGUCGUGU---UGCGGcGGCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 46043 0.73 0.367975
Target:  5'- -aACGGCGCcaacgagguuAUGCCGCCGCuGCACAGc -3'
miRNA:   3'- cgUGUCGUGu---------UGCGGCGGCG-CGUGUU- -5'
22871 3' -58 NC_005137.2 + 30945 0.73 0.376198
Target:  5'- cCGCGGCACAaagcaugcugaACG-CGCCGCGCGCc- -3'
miRNA:   3'- cGUGUCGUGU-----------UGCgGCGGCGCGUGuu -5'
22871 3' -58 NC_005137.2 + 18767 0.73 0.379521
Target:  5'- aGCAC-GCGgAACGCCGCguucaaucaucacugCGCGCACGu -3'
miRNA:   3'- -CGUGuCGUgUUGCGGCG---------------GCGCGUGUu -5'
22871 3' -58 NC_005137.2 + 34587 0.73 0.384543
Target:  5'- aCGCGGCGgGcGCGUCGCCGCGCGgGu -3'
miRNA:   3'- cGUGUCGUgU-UGCGGCGGCGCGUgUu -5'
22871 3' -58 NC_005137.2 + 35372 0.73 0.385385
Target:  5'- cGCACGGCGCAcgcggaaaaaACGacucguuaaacagcaCGUCGCGCACAGu -3'
miRNA:   3'- -CGUGUCGUGU----------UGCg--------------GCGGCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 86084 0.72 0.39301
Target:  5'- aGCACGGCGuCAugGUaCGCCGCG-ACGAg -3'
miRNA:   3'- -CGUGUCGU-GUugCG-GCGGCGCgUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.