miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22871 3' -58 NC_005137.2 + 102745 0.66 0.785356
Target:  5'- aGCAC-GUagACGACGCgGUgGCGUGCGAg -3'
miRNA:   3'- -CGUGuCG--UGUUGCGgCGgCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 7154 0.67 0.727388
Target:  5'- ----uGCGCGGCGUguaaGCCGCGCGCu- -3'
miRNA:   3'- cguguCGUGUUGCGg---CGGCGCGUGuu -5'
22871 3' -58 NC_005137.2 + 108548 0.67 0.727388
Target:  5'- aGCGCGGUGCAGCcgaCGgaGCGCACGu -3'
miRNA:   3'- -CGUGUCGUGUUGcg-GCggCGCGUGUu -5'
22871 3' -58 NC_005137.2 + 97231 1.07 0.001695
Target:  5'- gGCACAGCACAACGCCGCCGCGCACAAu -3'
miRNA:   3'- -CGUGUCGUGUUGCGGCGGCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 32634 0.66 0.775992
Target:  5'- aGCcCGuCGCGACGgCGCCaaaccgGCGCACAAg -3'
miRNA:   3'- -CGuGUcGUGUUGCgGCGG------CGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 14880 0.66 0.775992
Target:  5'- uGUAgGGUGCgaGugGCCGCCuguauuuuguccGCGCACAc -3'
miRNA:   3'- -CGUgUCGUG--UugCGGCGG------------CGCGUGUu -5'
22871 3' -58 NC_005137.2 + 5893 0.66 0.775992
Target:  5'- -aGCGGCGCGGC-CCGCCGC-UugAGu -3'
miRNA:   3'- cgUGUCGUGUUGcGGCGGCGcGugUU- -5'
22871 3' -58 NC_005137.2 + 98791 0.66 0.766497
Target:  5'- uGCcaaGGC-CAuucgucugccaaACGCCGCCGUGCGCc- -3'
miRNA:   3'- -CGug-UCGuGU------------UGCGGCGGCGCGUGuu -5'
22871 3' -58 NC_005137.2 + 31206 0.66 0.747149
Target:  5'- cGUACAcGCGCGGCGaCC-UCGUGUACAGa -3'
miRNA:   3'- -CGUGU-CGUGUUGC-GGcGGCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 42496 0.67 0.727388
Target:  5'- aCGCA-CACGGCGCuUGCUGCGCGgCGAc -3'
miRNA:   3'- cGUGUcGUGUUGCG-GCGGCGCGU-GUU- -5'
22871 3' -58 NC_005137.2 + 67362 0.66 0.736327
Target:  5'- gGCGCGacgcgauGCGCGAcCGUCGCCGCG-GCGg -3'
miRNA:   3'- -CGUGU-------CGUGUU-GCGGCGGCGCgUGUu -5'
22871 3' -58 NC_005137.2 + 20843 0.66 0.756879
Target:  5'- aCAUuaGGCGCAACGuuGCagcgGUGCACGc -3'
miRNA:   3'- cGUG--UCGUGUUGCggCGg---CGCGUGUu -5'
22871 3' -58 NC_005137.2 + 99517 0.66 0.785356
Target:  5'- aCACGaCGCAAUuuuuaccggaaGCgUGCCGCGCACAAg -3'
miRNA:   3'- cGUGUcGUGUUG-----------CG-GCGGCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 109510 0.66 0.736327
Target:  5'- uGCACAaauauauGCACAA-GUCGCUGCGUGCc- -3'
miRNA:   3'- -CGUGU-------CGUGUUgCGGCGGCGCGUGuu -5'
22871 3' -58 NC_005137.2 + 63707 0.66 0.779753
Target:  5'- uGCGCAGCGCAacagagacaaACGCUuagagugucccauguGCCGaCGCAa-- -3'
miRNA:   3'- -CGUGUCGUGU----------UGCGG---------------CGGC-GCGUguu -5'
22871 3' -58 NC_005137.2 + 27186 0.66 0.766497
Target:  5'- uGC-CGuGCAcCAAC-CCGCCGCcGCACAc -3'
miRNA:   3'- -CGuGU-CGU-GUUGcGGCGGCG-CGUGUu -5'
22871 3' -58 NC_005137.2 + 82670 0.67 0.727388
Target:  5'- uGCAgAuacGCACGugcCGCCaagGCCGUGCGCGAc -3'
miRNA:   3'- -CGUgU---CGUGUu--GCGG---CGGCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 54723 0.67 0.727388
Target:  5'- cGUACAGCA--ACGUguugucaaaGUCGCGCACGAa -3'
miRNA:   3'- -CGUGUCGUguUGCGg--------CGGCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 103693 0.66 0.775992
Target:  5'- cCACuGCcCAaaACGCCGCCGC-CACc- -3'
miRNA:   3'- cGUGuCGuGU--UGCGGCGGCGcGUGuu -5'
22871 3' -58 NC_005137.2 + 100129 0.66 0.775992
Target:  5'- gGCuGCGGCGCAuugGCGUUcgGUCGUGCACGc -3'
miRNA:   3'- -CG-UGUCGUGU---UGCGG--CGGCGCGUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.