miRNA display CGI


Results 21 - 40 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22871 3' -58 NC_005137.2 + 102745 0.66 0.785356
Target:  5'- aGCAC-GUagACGACGCgGUgGCGUGCGAg -3'
miRNA:   3'- -CGUGuCG--UGUUGCGgCGgCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 126040 0.68 0.656071
Target:  5'- cGUGCGGCAUAuuguauuCGCCGUaguaaGCGUACAc -3'
miRNA:   3'- -CGUGUCGUGUu------GCGGCGg----CGCGUGUu -5'
22871 3' -58 NC_005137.2 + 99987 0.68 0.66639
Target:  5'- aGCAuCAGCccgacguaGCGGCGCCGaCCaGCGUGCGc -3'
miRNA:   3'- -CGU-GUCG--------UGUUGCGGC-GG-CGCGUGUu -5'
22871 3' -58 NC_005137.2 + 70862 0.67 0.717376
Target:  5'- cGCGCAuGguCA-UGCUGCCGCGUgACAAa -3'
miRNA:   3'- -CGUGU-CguGUuGCGGCGGCGCG-UGUU- -5'
22871 3' -58 NC_005137.2 + 114384 0.66 0.74617
Target:  5'- -uGCGGCuaaaacuuuuccGCGAUuagucgaGCCGCCGCGCAuCAAu -3'
miRNA:   3'- cgUGUCG------------UGUUG-------CGGCGGCGCGU-GUU- -5'
22871 3' -58 NC_005137.2 + 31017 0.68 0.614684
Target:  5'- -gGCGGUugGugcguGCGCUGCUGgCGCACGAa -3'
miRNA:   3'- cgUGUCGugU-----UGCGGCGGC-GCGUGUU- -5'
22871 3' -58 NC_005137.2 + 14132 0.68 0.656071
Target:  5'- uCGCGGgGCAGCGCacaUGCGCACAc -3'
miRNA:   3'- cGUGUCgUGUUGCGgcgGCGCGUGUu -5'
22871 3' -58 NC_005137.2 + 98791 0.66 0.766497
Target:  5'- uGCcaaGGC-CAuucgucugccaaACGCCGCCGUGCGCc- -3'
miRNA:   3'- -CGug-UCGuGU------------UGCGGCGGCGCGUGuu -5'
22871 3' -58 NC_005137.2 + 65421 0.67 0.69714
Target:  5'- -aGCGGCACccAAUGCCGuugcCCGUGUACAc -3'
miRNA:   3'- cgUGUCGUG--UUGCGGC----GGCGCGUGUu -5'
22871 3' -58 NC_005137.2 + 102955 0.67 0.707291
Target:  5'- gGCGCAuCcCAGCGCgCGUCGCGcCACGu -3'
miRNA:   3'- -CGUGUcGuGUUGCG-GCGGCGC-GUGUu -5'
22871 3' -58 NC_005137.2 + 100129 0.66 0.775992
Target:  5'- gGCuGCGGCGCAuugGCGUUcgGUCGUGCACGc -3'
miRNA:   3'- -CG-UGUCGUGU---UGCGG--CGGCGCGUGUu -5'
22871 3' -58 NC_005137.2 + 14880 0.66 0.775992
Target:  5'- uGUAgGGUGCgaGugGCCGCCuguauuuuguccGCGCACAc -3'
miRNA:   3'- -CGUgUCGUG--UugCGGCGG------------CGCGUGUu -5'
22871 3' -58 NC_005137.2 + 117302 0.69 0.604351
Target:  5'- -aAUAGCaACAACGCgGUCGCGCcCAc -3'
miRNA:   3'- cgUGUCG-UGUUGCGgCGGCGCGuGUu -5'
22871 3' -58 NC_005137.2 + 37528 0.68 0.614684
Target:  5'- uGCuguuuCGGCaaACGGCGCUGgCGCGCACc- -3'
miRNA:   3'- -CGu----GUCG--UGUUGCGGCgGCGCGUGuu -5'
22871 3' -58 NC_005137.2 + 103541 0.68 0.66639
Target:  5'- -gGCGGCGC-ACGUCGCgacgucaauugCGCGUACGAg -3'
miRNA:   3'- cgUGUCGUGuUGCGGCG-----------GCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 82670 0.67 0.727388
Target:  5'- uGCAgAuacGCACGugcCGCCaagGCCGUGCGCGAc -3'
miRNA:   3'- -CGUgU---CGUGUu--GCGG---CGGCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 67362 0.66 0.736327
Target:  5'- gGCGCGacgcgauGCGCGAcCGUCGCCGCG-GCGg -3'
miRNA:   3'- -CGUGU-------CGUGUU-GCGGCGGCGCgUGUu -5'
22871 3' -58 NC_005137.2 + 32634 0.66 0.775992
Target:  5'- aGCcCGuCGCGACGgCGCCaaaccgGCGCACAAg -3'
miRNA:   3'- -CGuGUcGUGUUGCgGCGG------CGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 54652 0.67 0.707291
Target:  5'- uCGCGGCGCAAuaauaaacaguCGCuCGgUGCGCGCGGg -3'
miRNA:   3'- cGUGUCGUGUU-----------GCG-GCgGCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 126 0.67 0.69714
Target:  5'- -uGCGGCGCGu--CCGCgGCGUACAAu -3'
miRNA:   3'- cgUGUCGUGUugcGGCGgCGCGUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.