miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22871 3' -58 NC_005137.2 + 130863 0.69 0.563303
Target:  5'- cGCGCAGC-CcGCGCCugaauuguacGCCGCGgACGc -3'
miRNA:   3'- -CGUGUCGuGuUGCGG----------CGGCGCgUGUu -5'
22871 3' -58 NC_005137.2 + 130527 0.68 0.656071
Target:  5'- uGUACAacacGCugGGCaGCCGCCGCggcgGCAUAGa -3'
miRNA:   3'- -CGUGU----CGugUUG-CGGCGGCG----CGUGUU- -5'
22871 3' -58 NC_005137.2 + 128975 0.7 0.512149
Target:  5'- aGCAaauaaGGCGCGaccuaaauagucuGCGCCGCagCGUGCACGAg -3'
miRNA:   3'- -CGUg----UCGUGU-------------UGCGGCG--GCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 128520 0.7 0.503313
Target:  5'- --cCAGCACcAUGCCGCaCGCgGCGCAu -3'
miRNA:   3'- cguGUCGUGuUGCGGCG-GCG-CGUGUu -5'
22871 3' -58 NC_005137.2 + 126040 0.68 0.656071
Target:  5'- cGUGCGGCAUAuuguauuCGCCGUaguaaGCGUACAc -3'
miRNA:   3'- -CGUGUCGUGUu------GCGGCGg----CGCGUGUu -5'
22871 3' -58 NC_005137.2 + 125953 0.69 0.573508
Target:  5'- gGCGCAcGCACGACGUcuCGuUUGCGUACGAg -3'
miRNA:   3'- -CGUGU-CGUGUUGCG--GC-GGCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 125055 0.69 0.583756
Target:  5'- cGgGCGGCGCGGCGCCGgauCUGaacgGCGCAAa -3'
miRNA:   3'- -CgUGUCGUGUUGCGGC---GGCg---CGUGUU- -5'
22871 3' -58 NC_005137.2 + 124962 0.67 0.717376
Target:  5'- aCGCGGCGCcggugauggGGCGCugCGCUGCGUugGAa -3'
miRNA:   3'- cGUGUCGUG---------UUGCG--GCGGCGCGugUU- -5'
22871 3' -58 NC_005137.2 + 123814 0.72 0.434385
Target:  5'- -gACGGCACGcgccgguucgaaauGCGCUGCaaCGCGCGCGAu -3'
miRNA:   3'- cgUGUCGUGU--------------UGCGGCG--GCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 123102 0.67 0.67668
Target:  5'- gGCAaauGCGCAauggagcuGCGCCGgUGUGCACGu -3'
miRNA:   3'- -CGUgu-CGUGU--------UGCGGCgGCGCGUGUu -5'
22871 3' -58 NC_005137.2 + 123056 0.66 0.775992
Target:  5'- cGC-CGGU-CGAgGUCGCgGCGCGCAGc -3'
miRNA:   3'- -CGuGUCGuGUUgCGGCGgCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 122376 0.66 0.785356
Target:  5'- -aAUAGCACGcccACGcCCGCCGCcuuaGCGCc- -3'
miRNA:   3'- cgUGUCGUGU---UGC-GGCGGCG----CGUGuu -5'
22871 3' -58 NC_005137.2 + 122315 0.66 0.775992
Target:  5'- aGCGCGaauaaugucuuGCACaAGCGUgGCCGCGCu--- -3'
miRNA:   3'- -CGUGU-----------CGUG-UUGCGgCGGCGCGuguu -5'
22871 3' -58 NC_005137.2 + 121510 0.7 0.523035
Target:  5'- -aGCGGCgGCAGCcCCGCCGUugaGCACAAa -3'
miRNA:   3'- cgUGUCG-UGUUGcGGCGGCG---CGUGUU- -5'
22871 3' -58 NC_005137.2 + 119686 0.71 0.459265
Target:  5'- gGCACGGCGCGcgcacacagcuuagcACGuacgcaucCCGCCGCGCAg-- -3'
miRNA:   3'- -CGUGUCGUGU---------------UGC--------GGCGGCGCGUguu -5'
22871 3' -58 NC_005137.2 + 117563 0.66 0.775992
Target:  5'- uGUAcCGGCAaaguGCGCCGCCG-GUGCGg -3'
miRNA:   3'- -CGU-GUCGUgu--UGCGGCGGCgCGUGUu -5'
22871 3' -58 NC_005137.2 + 117302 0.69 0.604351
Target:  5'- -aAUAGCaACAACGCgGUCGCGCcCAc -3'
miRNA:   3'- cgUGUCG-UGUUGCGgCGGCGCGuGUu -5'
22871 3' -58 NC_005137.2 + 114384 0.66 0.74617
Target:  5'- -uGCGGCuaaaacuuuuccGCGAUuagucgaGCCGCCGCGCAuCAAu -3'
miRNA:   3'- cgUGUCG------------UGUUG-------CGGCGGCGCGU-GUU- -5'
22871 3' -58 NC_005137.2 + 113706 0.73 0.367975
Target:  5'- cGCACAGCGCGucaAUGUC-CUGCGCAUAAc -3'
miRNA:   3'- -CGUGUCGUGU---UGCGGcGGCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 112755 0.74 0.313939
Target:  5'- -aACGGaCGCGGCGCCGCagucgaacgaCGCGCACAc -3'
miRNA:   3'- cgUGUC-GUGUUGCGGCG----------GCGCGUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.