Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22873 | 5' | -57.5 | NC_005137.2 | + | 95466 | 1.12 | 0.001044 |
Target: 5'- uUGACAAGCGCCGUGUUGCCCACGGCCg -3' miRNA: 3'- -ACUGUUCGCGGCACAACGGGUGCCGG- -5' |
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22873 | 5' | -57.5 | NC_005137.2 | + | 24722 | 0.79 | 0.181879 |
Target: 5'- aGACAuuGGCGCCGUGggGCaUCGCGuGCCu -3' miRNA: 3'- aCUGU--UCGCGGCACaaCG-GGUGC-CGG- -5' |
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22873 | 5' | -57.5 | NC_005137.2 | + | 34684 | 0.74 | 0.395186 |
Target: 5'- -aGCAAGCGCCGUGggGUCC-CGuGUCc -3' miRNA: 3'- acUGUUCGCGGCACaaCGGGuGC-CGG- -5' |
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22873 | 5' | -57.5 | NC_005137.2 | + | 34530 | 0.73 | 0.403706 |
Target: 5'- cGACGcGCaCCGUGUUGCguUCGCGGUCa -3' miRNA: 3'- aCUGUuCGcGGCACAACG--GGUGCCGG- -5' |
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22873 | 5' | -57.5 | NC_005137.2 | + | 127004 | 0.71 | 0.514206 |
Target: 5'- aGGCAAGCGCUugGU-UUGCCCGcCGGUUa -3' miRNA: 3'- aCUGUUCGCGG--CAcAACGGGU-GCCGG- -5' |
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22873 | 5' | -57.5 | NC_005137.2 | + | 12447 | 0.7 | 0.573928 |
Target: 5'- gUGAuCAGGCGCUuUcaUGUCCACGGUCg -3' miRNA: 3'- -ACU-GUUCGCGGcAcaACGGGUGCCGG- -5' |
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22873 | 5' | -57.5 | NC_005137.2 | + | 34803 | 0.7 | 0.594231 |
Target: 5'- uUGACGcAGUauugGCuCGguuUGUacuUGCCCACGGCCg -3' miRNA: 3'- -ACUGU-UCG----CG-GC---ACA---ACGGGUGCCGG- -5' |
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22873 | 5' | -57.5 | NC_005137.2 | + | 67693 | 0.7 | 0.604428 |
Target: 5'- cUGACAuuguagugagGGCGCgCGUugUGCCCGCGaGCg -3' miRNA: 3'- -ACUGU----------UCGCG-GCAcaACGGGUGC-CGg -5' |
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22873 | 5' | -57.5 | NC_005137.2 | + | 78736 | 0.69 | 0.624875 |
Target: 5'- cGAUAAGUGCgCG-GUcUGCCCGgGcGCCg -3' miRNA: 3'- aCUGUUCGCG-GCaCA-ACGGGUgC-CGG- -5' |
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22873 | 5' | -57.5 | NC_005137.2 | + | 56649 | 0.69 | 0.634087 |
Target: 5'- gUGGCAAcGCGUgcgaccuCGUGcUUGCCgACGGCg -3' miRNA: 3'- -ACUGUU-CGCG-------GCAC-AACGGgUGCCGg -5' |
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22873 | 5' | -57.5 | NC_005137.2 | + | 29985 | 0.69 | 0.645344 |
Target: 5'- aGAUggAAGCGCUGUugucuGUUGCgCACaaGGCCg -3' miRNA: 3'- aCUG--UUCGCGGCA-----CAACGgGUG--CCGG- -5' |
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22873 | 5' | -57.5 | NC_005137.2 | + | 83006 | 0.69 | 0.664751 |
Target: 5'- uUGACGaguugugAGCGCgucauUGUGUUGUuuGCGGUCg -3' miRNA: 3'- -ACUGU-------UCGCG-----GCACAACGggUGCCGG- -5' |
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22873 | 5' | -57.5 | NC_005137.2 | + | 98779 | 0.69 | 0.665771 |
Target: 5'- cGACAAGCGUC---UUGCCaa-GGCCa -3' miRNA: 3'- aCUGUUCGCGGcacAACGGgugCCGG- -5' |
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22873 | 5' | -57.5 | NC_005137.2 | + | 97989 | 0.69 | 0.665771 |
Target: 5'- gGGCGcGCGgCGUGggugcGCCCGCcaaguGGCCa -3' miRNA: 3'- aCUGUuCGCgGCACaa---CGGGUG-----CCGG- -5' |
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22873 | 5' | -57.5 | NC_005137.2 | + | 38977 | 0.69 | 0.675948 |
Target: 5'- gGACAGcuugcguuuuGCGCCGUuUUGCCgGCGGa- -3' miRNA: 3'- aCUGUU----------CGCGGCAcAACGGgUGCCgg -5' |
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22873 | 5' | -57.5 | NC_005137.2 | + | 123984 | 0.68 | 0.696186 |
Target: 5'- cGACGAG-GCCGUGacgcgcgUGCgCCACGuuguGCCc -3' miRNA: 3'- aCUGUUCgCGGCACa------ACG-GGUGC----CGG- -5' |
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22873 | 5' | -57.5 | NC_005137.2 | + | 20950 | 0.68 | 0.696186 |
Target: 5'- cGACGAcuGCGUC-UGcUGCCUGCGGCg -3' miRNA: 3'- aCUGUU--CGCGGcACaACGGGUGCCGg -5' |
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22873 | 5' | -57.5 | NC_005137.2 | + | 99936 | 0.68 | 0.706228 |
Target: 5'- cGGCGAcGCGCaCGcaUGUUGgacaacggCCGCGGCCg -3' miRNA: 3'- aCUGUU-CGCG-GC--ACAACg-------GGUGCCGG- -5' |
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22873 | 5' | -57.5 | NC_005137.2 | + | 53701 | 0.68 | 0.706228 |
Target: 5'- aGACGAGCcgGCCGUuUUGgccacaaCCACGGaCCg -3' miRNA: 3'- aCUGUUCG--CGGCAcAACg------GGUGCC-GG- -5' |
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22873 | 5' | -57.5 | NC_005137.2 | + | 31648 | 0.68 | 0.706228 |
Target: 5'- -uGCGGGCGCCGUGcaUUGUuccgacgcguaCCACGcGCUg -3' miRNA: 3'- acUGUUCGCGGCAC--AACG-----------GGUGC-CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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