miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22873 5' -57.5 NC_005137.2 + 34803 0.7 0.594231
Target:  5'- uUGACGcAGUauugGCuCGguuUGUacuUGCCCACGGCCg -3'
miRNA:   3'- -ACUGU-UCG----CG-GC---ACA---ACGGGUGCCGG- -5'
22873 5' -57.5 NC_005137.2 + 38658 0.66 0.814037
Target:  5'- gGGCAGGCGCgCGUugcgGcacaaaaaaaauuuuUUGCCCgcuACGGUCa -3'
miRNA:   3'- aCUGUUCGCG-GCA----C---------------AACGGG---UGCCGG- -5'
22873 5' -57.5 NC_005137.2 + 115297 0.66 0.792689
Target:  5'- gGACGAGCuGCgGgcgaUUGCgCCGCGGUUg -3'
miRNA:   3'- aCUGUUCG-CGgCac--AACG-GGUGCCGG- -5'
22873 5' -57.5 NC_005137.2 + 50082 0.66 0.792689
Target:  5'- uUGACGcGCGCC------UCCACGGCCg -3'
miRNA:   3'- -ACUGUuCGCGGcacaacGGGUGCCGG- -5'
22873 5' -57.5 NC_005137.2 + 64310 0.67 0.783542
Target:  5'- gUGACGcGCGCUGcGccaauUUGCCCGagggcacaGGCCa -3'
miRNA:   3'- -ACUGUuCGCGGCaC-----AACGGGUg-------CCGG- -5'
22873 5' -57.5 NC_005137.2 + 63645 0.67 0.783542
Target:  5'- cGACGGucGCGCauCGcGUcgcGCCCGCGGUCa -3'
miRNA:   3'- aCUGUU--CGCG--GCaCAa--CGGGUGCCGG- -5'
22873 5' -57.5 NC_005137.2 + 34052 0.67 0.755319
Target:  5'- uUGACGcuGUuuccgGCCGUGUcguaucUGCCuUGCGGCCa -3'
miRNA:   3'- -ACUGUu-CG-----CGGCACA------ACGG-GUGCCGG- -5'
22873 5' -57.5 NC_005137.2 + 99246 0.67 0.745681
Target:  5'- gGGCGcGCGCCccGUUGCC-ACGGgCa -3'
miRNA:   3'- aCUGUuCGCGGcaCAACGGgUGCCgG- -5'
22873 5' -57.5 NC_005137.2 + 95645 0.68 0.735944
Target:  5'- -cGCGuGCGCCGUGc-GCCgACGGgCa -3'
miRNA:   3'- acUGUuCGCGGCACaaCGGgUGCCgG- -5'
22873 5' -57.5 NC_005137.2 + 11367 0.68 0.735944
Target:  5'- -cACGAGCGCguuccgCGUGUuuuuUGUCCaguugcGCGGCCa -3'
miRNA:   3'- acUGUUCGCG------GCACA----ACGGG------UGCCGG- -5'
22873 5' -57.5 NC_005137.2 + 60896 0.68 0.716209
Target:  5'- cGAC--GCGCuCGUgGUUGCCCaaACGGUa -3'
miRNA:   3'- aCUGuuCGCG-GCA-CAACGGG--UGCCGg -5'
22873 5' -57.5 NC_005137.2 + 110424 0.68 0.716209
Target:  5'- cUGGCAacgGGCGCgacgGUGagcgUGCacaCCGCGGCCg -3'
miRNA:   3'- -ACUGU---UCGCGg---CACa---ACG---GGUGCCGG- -5'
22873 5' -57.5 NC_005137.2 + 99936 0.68 0.706228
Target:  5'- cGGCGAcGCGCaCGcaUGUUGgacaacggCCGCGGCCg -3'
miRNA:   3'- aCUGUU-CGCG-GC--ACAACg-------GGUGCCGG- -5'
22873 5' -57.5 NC_005137.2 + 20950 0.68 0.696186
Target:  5'- cGACGAcuGCGUC-UGcUGCCUGCGGCg -3'
miRNA:   3'- aCUGUU--CGCGGcACaACGGGUGCCGg -5'
22873 5' -57.5 NC_005137.2 + 38977 0.69 0.675948
Target:  5'- gGACAGcuugcguuuuGCGCCGUuUUGCCgGCGGa- -3'
miRNA:   3'- aCUGUU----------CGCGGCAcAACGGgUGCCgg -5'
22873 5' -57.5 NC_005137.2 + 97989 0.69 0.665771
Target:  5'- gGGCGcGCGgCGUGggugcGCCCGCcaaguGGCCa -3'
miRNA:   3'- aCUGUuCGCgGCACaa---CGGGUG-----CCGG- -5'
22873 5' -57.5 NC_005137.2 + 29985 0.69 0.645344
Target:  5'- aGAUggAAGCGCUGUugucuGUUGCgCACaaGGCCg -3'
miRNA:   3'- aCUG--UUCGCGGCA-----CAACGgGUG--CCGG- -5'
22873 5' -57.5 NC_005137.2 + 56649 0.69 0.634087
Target:  5'- gUGGCAAcGCGUgcgaccuCGUGcUUGCCgACGGCg -3'
miRNA:   3'- -ACUGUU-CGCG-------GCAC-AACGGgUGCCGg -5'
22873 5' -57.5 NC_005137.2 + 78736 0.69 0.624875
Target:  5'- cGAUAAGUGCgCG-GUcUGCCCGgGcGCCg -3'
miRNA:   3'- aCUGUUCGCG-GCaCA-ACGGGUgC-CGG- -5'
22873 5' -57.5 NC_005137.2 + 34684 0.74 0.395186
Target:  5'- -aGCAAGCGCCGUGggGUCC-CGuGUCc -3'
miRNA:   3'- acUGUUCGCGGCACaaCGGGuGC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.