Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22873 | 5' | -57.5 | NC_005137.2 | + | 1509 | 0.66 | 0.836086 |
Target: 5'- -cGCGcGGCGCCGacgcGUUGUUCAauuCGGCCa -3' miRNA: 3'- acUGU-UCGCGGCa---CAACGGGU---GCCGG- -5' |
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22873 | 5' | -57.5 | NC_005137.2 | + | 11367 | 0.68 | 0.735944 |
Target: 5'- -cACGAGCGCguuccgCGUGUuuuuUGUCCaguugcGCGGCCa -3' miRNA: 3'- acUGUUCGCG------GCACA----ACGGG------UGCCGG- -5' |
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22873 | 5' | -57.5 | NC_005137.2 | + | 12447 | 0.7 | 0.573928 |
Target: 5'- gUGAuCAGGCGCUuUcaUGUCCACGGUCg -3' miRNA: 3'- -ACU-GUUCGCGGcAcaACGGGUGCCGG- -5' |
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22873 | 5' | -57.5 | NC_005137.2 | + | 13159 | 0.66 | 0.792689 |
Target: 5'- gGACGcguccGUGCUGgugGUUGCCC-CGGUg -3' miRNA: 3'- aCUGUu----CGCGGCa--CAACGGGuGCCGg -5' |
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22873 | 5' | -57.5 | NC_005137.2 | + | 20950 | 0.68 | 0.696186 |
Target: 5'- cGACGAcuGCGUC-UGcUGCCUGCGGCg -3' miRNA: 3'- aCUGUU--CGCGGcACaACGGGUGCCGg -5' |
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22873 | 5' | -57.5 | NC_005137.2 | + | 24722 | 0.79 | 0.181879 |
Target: 5'- aGACAuuGGCGCCGUGggGCaUCGCGuGCCu -3' miRNA: 3'- aCUGU--UCGCGGCACaaCG-GGUGC-CGG- -5' |
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22873 | 5' | -57.5 | NC_005137.2 | + | 29985 | 0.69 | 0.645344 |
Target: 5'- aGAUggAAGCGCUGUugucuGUUGCgCACaaGGCCg -3' miRNA: 3'- aCUG--UUCGCGGCA-----CAACGgGUG--CCGG- -5' |
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22873 | 5' | -57.5 | NC_005137.2 | + | 31648 | 0.68 | 0.706228 |
Target: 5'- -uGCGGGCGCCGUGcaUUGUuccgacgcguaCCACGcGCUg -3' miRNA: 3'- acUGUUCGCGGCAC--AACG-----------GGUGC-CGG- -5' |
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22873 | 5' | -57.5 | NC_005137.2 | + | 34052 | 0.67 | 0.755319 |
Target: 5'- uUGACGcuGUuuccgGCCGUGUcguaucUGCCuUGCGGCCa -3' miRNA: 3'- -ACUGUu-CG-----CGGCACA------ACGG-GUGCCGG- -5' |
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22873 | 5' | -57.5 | NC_005137.2 | + | 34530 | 0.73 | 0.403706 |
Target: 5'- cGACGcGCaCCGUGUUGCguUCGCGGUCa -3' miRNA: 3'- aCUGUuCGcGGCACAACG--GGUGCCGG- -5' |
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22873 | 5' | -57.5 | NC_005137.2 | + | 34684 | 0.74 | 0.395186 |
Target: 5'- -aGCAAGCGCCGUGggGUCC-CGuGUCc -3' miRNA: 3'- acUGUUCGCGGCACaaCGGGuGC-CGG- -5' |
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22873 | 5' | -57.5 | NC_005137.2 | + | 34803 | 0.7 | 0.594231 |
Target: 5'- uUGACGcAGUauugGCuCGguuUGUacuUGCCCACGGCCg -3' miRNA: 3'- -ACUGU-UCG----CG-GC---ACA---ACGGGUGCCGG- -5' |
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22873 | 5' | -57.5 | NC_005137.2 | + | 37322 | 0.67 | 0.745681 |
Target: 5'- cGAUccGGCGCUGggccUGUUGCgcaucuaCGCGGCCg -3' miRNA: 3'- aCUGu-UCGCGGC----ACAACGg------GUGCCGG- -5' |
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22873 | 5' | -57.5 | NC_005137.2 | + | 38658 | 0.66 | 0.814037 |
Target: 5'- gGGCAGGCGCgCGUugcgGcacaaaaaaaauuuuUUGCCCgcuACGGUCa -3' miRNA: 3'- aCUGUUCGCG-GCA----C---------------AACGGG---UGCCGG- -5' |
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22873 | 5' | -57.5 | NC_005137.2 | + | 38977 | 0.69 | 0.675948 |
Target: 5'- gGACAGcuugcguuuuGCGCCGUuUUGCCgGCGGa- -3' miRNA: 3'- aCUGUU----------CGCGGCAcAACGGgUGCCgg -5' |
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22873 | 5' | -57.5 | NC_005137.2 | + | 49054 | 0.66 | 0.827747 |
Target: 5'- cGACAGGUaGCCGUGcgagcGCaCUGCGGgCg -3' miRNA: 3'- aCUGUUCG-CGGCACaa---CG-GGUGCCgG- -5' |
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22873 | 5' | -57.5 | NC_005137.2 | + | 50082 | 0.66 | 0.792689 |
Target: 5'- uUGACGcGCGCC------UCCACGGCCg -3' miRNA: 3'- -ACUGUuCGCGGcacaacGGGUGCCGG- -5' |
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22873 | 5' | -57.5 | NC_005137.2 | + | 53701 | 0.68 | 0.706228 |
Target: 5'- aGACGAGCcgGCCGUuUUGgccacaaCCACGGaCCg -3' miRNA: 3'- aCUGUUCG--CGGCAcAACg------GGUGCC-GG- -5' |
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22873 | 5' | -57.5 | NC_005137.2 | + | 55717 | 0.66 | 0.819229 |
Target: 5'- -aACGAGaCGCCGU--UGCCCGCcguuacaGCCg -3' miRNA: 3'- acUGUUC-GCGGCAcaACGGGUGc------CGG- -5' |
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22873 | 5' | -57.5 | NC_005137.2 | + | 56649 | 0.69 | 0.634087 |
Target: 5'- gUGGCAAcGCGUgcgaccuCGUGcUUGCCgACGGCg -3' miRNA: 3'- -ACUGUU-CGCG-------GCAC-AACGGgUGCCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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