Results 41 - 53 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22878 | 5' | -53.8 | NC_005137.2 | + | 27316 | 0.67 | 0.90902 |
Target: 5'- gGCGGCgGCGUUUugggcaGUGGCgAAgGUGAUc -3' miRNA: 3'- aUGCCG-CGCAAA------CGCCGgUUgCAUUG- -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 24299 | 0.84 | 0.147865 |
Target: 5'- aACGGCgGCGUUUGCGGCUgcgGugGUGGCg -3' miRNA: 3'- aUGCCG-CGCAAACGCCGG---UugCAUUG- -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 23086 | 0.67 | 0.90902 |
Target: 5'- cACGGCGCGUUguuccGCGGUaagcugggcuACGUGc- -3' miRNA: 3'- aUGCCGCGCAAa----CGCCGgu--------UGCAUug -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 20381 | 0.7 | 0.769899 |
Target: 5'- -uCGGCGCGUUUGUgcacGGCCGucaccACG-GACa -3' miRNA: 3'- auGCCGCGCAAACG----CCGGU-----UGCaUUG- -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 14718 | 0.7 | 0.750179 |
Target: 5'- -uUGGCGUGcgUGCuGGCCGucuuccacaACGUGACg -3' miRNA: 3'- auGCCGCGCaaACG-CCGGU---------UGCAUUG- -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 13548 | 0.66 | 0.937233 |
Target: 5'- uUugGGCGCGUaaaacGCGuuCAGCGUAc- -3' miRNA: 3'- -AugCCGCGCAaa---CGCcgGUUGCAUug -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 12952 | 0.69 | 0.798467 |
Target: 5'- --aGGUGCgGUUUGUGGCCAagaaaugcgcACGUGGg -3' miRNA: 3'- augCCGCG-CAAACGCCGGU----------UGCAUUg -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 12830 | 0.71 | 0.699114 |
Target: 5'- aACGGCGUcaaaGUUUuCGGCCAGgcCGUAGCc -3' miRNA: 3'- aUGCCGCG----CAAAcGCCGGUU--GCAUUG- -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 8621 | 0.68 | 0.859074 |
Target: 5'- cAgGGCGCuaagGCGGCgGGCGUGGg -3' miRNA: 3'- aUgCCGCGcaaaCGCCGgUUGCAUUg -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 6992 | 0.66 | 0.94211 |
Target: 5'- cACGGacgaGCGgucGCcgGGCaCAACGUGGCg -3' miRNA: 3'- aUGCCg---CGCaaaCG--CCG-GUUGCAUUG- -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 2118 | 0.65 | 0.946282 |
Target: 5'- aGCGcucgaaaGCGCGUUaGUGGCCAAUauaGUGAg -3' miRNA: 3'- aUGC-------CGCGCAAaCGCCGGUUG---CAUUg -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 765 | 0.68 | 0.84274 |
Target: 5'- gGCGGCaCGUUUgGCGGCggaGGCgGUGGCa -3' miRNA: 3'- aUGCCGcGCAAA-CGCCGg--UUG-CAUUG- -5' |
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22878 | 5' | -53.8 | NC_005137.2 | + | 125 | 0.72 | 0.657113 |
Target: 5'- cUGCGGCGCGUccGCGGCguACa---- -3' miRNA: 3'- -AUGCCGCGCAaaCGCCGguUGcauug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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