miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22880 3' -50.4 NC_005137.2 + 128693 0.75 0.759731
Target:  5'- uCCACGAGCGCGuugcggUCGAggaacccaaaacgAUGCAcaUCCGUg -3'
miRNA:   3'- -GGUGCUCGCGC------AGCU-------------UAUGUa-AGGCG- -5'
22880 3' -50.4 NC_005137.2 + 124395 0.7 0.955411
Target:  5'- gCUGCGcGCGCGUCGuuucagcgcgcaguuGUACAagUUCUGCu -3'
miRNA:   3'- -GGUGCuCGCGCAGCu--------------UAUGU--AAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 123847 0.68 0.983935
Target:  5'- aCUGUGAGCGCG-CGGcuUACAcgCCGCg -3'
miRNA:   3'- -GGUGCUCGCGCaGCUu-AUGUaaGGCG- -5'
22880 3' -50.4 NC_005137.2 + 119540 0.72 0.881922
Target:  5'- uCCGCuGA-CGUGUCGAGUGCGUUuaGCc -3'
miRNA:   3'- -GGUG-CUcGCGCAGCUUAUGUAAggCG- -5'
22880 3' -50.4 NC_005137.2 + 115298 0.67 0.990276
Target:  5'- -gACGAGCuGCGggCGAuUGCg--CCGCg -3'
miRNA:   3'- ggUGCUCG-CGCa-GCUuAUGuaaGGCG- -5'
22880 3' -50.4 NC_005137.2 + 112223 0.7 0.950891
Target:  5'- -aACGuGCGCGcagugaugaUUGAAcgcgGCGUUCCGCg -3'
miRNA:   3'- ggUGCuCGCGC---------AGCUUa---UGUAAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 110429 0.72 0.90892
Target:  5'- -aACGGGCGCGaCGGugagcGUGCAcaCCGCg -3'
miRNA:   3'- ggUGCUCGCGCaGCU-----UAUGUaaGGCG- -5'
22880 3' -50.4 NC_005137.2 + 110417 0.69 0.974865
Target:  5'- uCCACGuaCGCGUCGAcgGuCAUgUCGCg -3'
miRNA:   3'- -GGUGCucGCGCAGCUuaU-GUAaGGCG- -5'
22880 3' -50.4 NC_005137.2 + 108754 0.66 0.995239
Target:  5'- uUCGgGAGCGCGcUGcucaaAGUGCAcuUUCCGUg -3'
miRNA:   3'- -GGUgCUCGCGCaGC-----UUAUGU--AAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 108317 0.75 0.740862
Target:  5'- --uUGAGCGCGUUGGGgcUACAUUCgGCc -3'
miRNA:   3'- gguGCUCGCGCAGCUU--AUGUAAGgCG- -5'
22880 3' -50.4 NC_005137.2 + 108111 0.7 0.955012
Target:  5'- aCGCGuuGCGCGcCGAucGCAgcaCCGCa -3'
miRNA:   3'- gGUGCu-CGCGCaGCUuaUGUaa-GGCG- -5'
22880 3' -50.4 NC_005137.2 + 107963 0.67 0.991502
Target:  5'- gUCACGuauGCGCGaUCGGucGCGUUgaCGCg -3'
miRNA:   3'- -GGUGCu--CGCGC-AGCUuaUGUAAg-GCG- -5'
22880 3' -50.4 NC_005137.2 + 100265 0.77 0.679213
Target:  5'- gCACGGgcGCGCGUCGcg-GCAUUCaCGCc -3'
miRNA:   3'- gGUGCU--CGCGCAGCuuaUGUAAG-GCG- -5'
22880 3' -50.4 NC_005137.2 + 99334 0.67 0.991027
Target:  5'- aCCACGcGGCgGUGUCGuccgcuAUGCAcagcguggucgcgUCCGCg -3'
miRNA:   3'- -GGUGC-UCG-CGCAGCu-----UAUGUa------------AGGCG- -5'
22880 3' -50.4 NC_005137.2 + 97986 0.68 0.979776
Target:  5'- -aACGGGCGCGcggcgUGggUGCGc-CCGCc -3'
miRNA:   3'- ggUGCUCGCGCa----GCuuAUGUaaGGCG- -5'
22880 3' -50.4 NC_005137.2 + 97918 0.67 0.990276
Target:  5'- aCCACcuugucguuGGGCGUGUCaAGUACuugCUGCa -3'
miRNA:   3'- -GGUG---------CUCGCGCAGcUUAUGuaaGGCG- -5'
22880 3' -50.4 NC_005137.2 + 96546 0.71 0.926005
Target:  5'- uCCAauuGCGCGUCGggUugGccaccuuUUCUGCu -3'
miRNA:   3'- -GGUgcuCGCGCAGCuuAugU-------AAGGCG- -5'
22880 3' -50.4 NC_005137.2 + 96487 0.66 0.996527
Target:  5'- aCACGGuGCGCGUCGuGUccACGgg-CGCu -3'
miRNA:   3'- gGUGCU-CGCGCAGCuUA--UGUaagGCG- -5'
22880 3' -50.4 NC_005137.2 + 95499 0.67 0.988915
Target:  5'- gCACGGGCGCaUCGcugACGUggCCGg -3'
miRNA:   3'- gGUGCUCGCGcAGCuuaUGUAa-GGCg -5'
22880 3' -50.4 NC_005137.2 + 90389 0.66 0.993586
Target:  5'- gCCAaGAGCGCGUCcacGUugGUcgUCGCc -3'
miRNA:   3'- -GGUgCUCGCGCAGcu-UAugUAa-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.