miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22880 5' -52.6 NC_005137.2 + 94971 0.66 0.973196
Target:  5'- aCGCUuuUAACGcc--CGCGCCCGUGu- -3'
miRNA:   3'- cGCGA--AUUGCugcuGCGCGGGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 108150 0.66 0.96385
Target:  5'- cGgGCggcGGCGGCGucgguaugcGCGCGCCCGc--- -3'
miRNA:   3'- -CgCGaa-UUGCUGC---------UGCGCGGGCauuu -5'
22880 5' -52.6 NC_005137.2 + 43800 0.66 0.969389
Target:  5'- cCGaCUUucAGCGACGGCacgagcagccgcccGCGCCCGUcGAa -3'
miRNA:   3'- cGC-GAA--UUGCUGCUG--------------CGCGGGCAuUU- -5'
22880 5' -52.6 NC_005137.2 + 5114 0.66 0.973196
Target:  5'- -aGCUUucuuuUGAUGACGCGCgCCGa--- -3'
miRNA:   3'- cgCGAAuu---GCUGCUGCGCG-GGCauuu -5'
22880 5' -52.6 NC_005137.2 + 56595 0.66 0.967187
Target:  5'- aCGC--GACgGGCGACGUGCUCGaUAAAa -3'
miRNA:   3'- cGCGaaUUG-CUGCUGCGCGGGC-AUUU- -5'
22880 5' -52.6 NC_005137.2 + 99301 0.66 0.967187
Target:  5'- uGCGCUUcAugGugGGCGgGCCg----- -3'
miRNA:   3'- -CGCGAA-UugCugCUGCgCGGgcauuu -5'
22880 5' -52.6 NC_005137.2 + 63023 0.66 0.9703
Target:  5'- cGCGCguggccAACGACGACGUGCg------ -3'
miRNA:   3'- -CGCGaa----UUGCUGCUGCGCGggcauuu -5'
22880 5' -52.6 NC_005137.2 + 40613 0.66 0.9703
Target:  5'- gGCGaCgaccAACGugGACGCGCUCu---- -3'
miRNA:   3'- -CGC-Gaa--UUGCugCUGCGCGGGcauuu -5'
22880 5' -52.6 NC_005137.2 + 123998 0.66 0.967187
Target:  5'- cGCGCgu-GCGccACGuuGUGCCCGgcGAc -3'
miRNA:   3'- -CGCGaauUGC--UGCugCGCGGGCauUU- -5'
22880 5' -52.6 NC_005137.2 + 110586 0.66 0.958791
Target:  5'- gGCGCgcccauccuguGCGACGACcaguugGUGUCCGUGGu -3'
miRNA:   3'- -CGCGaau--------UGCUGCUG------CGCGGGCAUUu -5'
22880 5' -52.6 NC_005137.2 + 104366 0.66 0.967187
Target:  5'- cGCGCU--GCGACG-CGCacGCuuGUAc- -3'
miRNA:   3'- -CGCGAauUGCUGCuGCG--CGggCAUuu -5'
22880 5' -52.6 NC_005137.2 + 7952 0.66 0.966864
Target:  5'- uGCGCgccGCGAccucgacCGGCG-GCCCGUGu- -3'
miRNA:   3'- -CGCGaauUGCU-------GCUGCgCGGGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 11294 0.66 0.96385
Target:  5'- gGCGCUgcGCGGCGGgaUGCGUaCGUGc- -3'
miRNA:   3'- -CGCGAauUGCUGCU--GCGCGgGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 48170 0.67 0.945456
Target:  5'- -gGCUUGcgaauuauaauauccACGGCGACGUGUgCGUGu- -3'
miRNA:   3'- cgCGAAU---------------UGCUGCUGCGCGgGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 81807 0.67 0.952437
Target:  5'- cGCGCgucGCGuauCGAUGUGCCCa---- -3'
miRNA:   3'- -CGCGaauUGCu--GCUGCGCGGGcauuu -5'
22880 5' -52.6 NC_005137.2 + 124936 0.67 0.948148
Target:  5'- uGUGCUUGaucgccggguuGCGAUGAacgcgGCGCCgGUGAu -3'
miRNA:   3'- -CGCGAAU-----------UGCUGCUg----CGCGGgCAUUu -5'
22880 5' -52.6 NC_005137.2 + 64134 0.67 0.95648
Target:  5'- cGUGCUUAugacguGCGugGaaGCGCaCCCGUGc- -3'
miRNA:   3'- -CGCGAAU------UGCugC--UGCGcGGGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 35728 0.67 0.943611
Target:  5'- cGUGCUUAAUcGCGACaCGUCgGUAAAu -3'
miRNA:   3'- -CGCGAAUUGcUGCUGcGCGGgCAUUU- -5'
22880 5' -52.6 NC_005137.2 + 2327 0.67 0.938823
Target:  5'- cGCGCUcGugGA-GGCGUGCauggCCGUAAAc -3'
miRNA:   3'- -CGCGAaUugCUgCUGCGCG----GGCAUUU- -5'
22880 5' -52.6 NC_005137.2 + 72797 0.67 0.95648
Target:  5'- aCGCgUUGGCGGCG-CGCGCugCCGUc-- -3'
miRNA:   3'- cGCG-AAUUGCUGCuGCGCG--GGCAuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.