miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22880 5' -52.6 NC_005137.2 + 70154 1.08 0.005756
Target:  5'- aGCGCUUAACGACGACGCGCCCGUAAAc -3'
miRNA:   3'- -CGCGAAUUGCUGCUGCGCGGGCAUUU- -5'
22880 5' -52.6 NC_005137.2 + 80246 0.8 0.319017
Target:  5'- uGCGUUUGAUGACGGCGCGaacgCCGUGGc -3'
miRNA:   3'- -CGCGAAUUGCUGCUGCGCg---GGCAUUu -5'
22880 5' -52.6 NC_005137.2 + 108573 0.79 0.383435
Target:  5'- aCGUgau-CGGCGGCGCGCCCGUGu- -3'
miRNA:   3'- cGCGaauuGCUGCUGCGCGGGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 30851 0.78 0.427855
Target:  5'- -aGC-UGACGAccCGGCGCGCCCGUAc- -3'
miRNA:   3'- cgCGaAUUGCU--GCUGCGCGGGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 96405 0.78 0.437099
Target:  5'- cGCGCcgAccgcuacccgcGCGGCGACGCGCCCGc--- -3'
miRNA:   3'- -CGCGaaU-----------UGCUGCUGCGCGGGCauuu -5'
22880 5' -52.6 NC_005137.2 + 60872 0.77 0.494829
Target:  5'- aGCGCUauuuUAGCGGaauguauuCGACGCGCUCGUGGu -3'
miRNA:   3'- -CGCGA----AUUGCU--------GCUGCGCGGGCAUUu -5'
22880 5' -52.6 NC_005137.2 + 30738 0.76 0.52497
Target:  5'- gGCGUgaaugccGCGACG-CGCGCCCGUGc- -3'
miRNA:   3'- -CGCGaau----UGCUGCuGCGCGGGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 62619 0.75 0.587097
Target:  5'- uGUGCU---CGGcCGACGCGUCCGUAGAu -3'
miRNA:   3'- -CGCGAauuGCU-GCUGCGCGGGCAUUU- -5'
22880 5' -52.6 NC_005137.2 + 89184 0.74 0.618724
Target:  5'- aGCGCUaacaAACG-CGugGCGCgCCGUGAc -3'
miRNA:   3'- -CGCGAa---UUGCuGCugCGCG-GGCAUUu -5'
22880 5' -52.6 NC_005137.2 + 97990 0.74 0.629299
Target:  5'- gGCGCgcGGCGugGGUGCGCCCGc--- -3'
miRNA:   3'- -CGCGaaUUGCugCUGCGCGGGCauuu -5'
22880 5' -52.6 NC_005137.2 + 34516 0.73 0.713215
Target:  5'- aGCGCccgugGAC-ACGACGCGCaCCGUGu- -3'
miRNA:   3'- -CGCGaa---UUGcUGCUGCGCG-GGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 26303 0.72 0.743736
Target:  5'- cGCGUacAACGGCGGCGCGCUgGa--- -3'
miRNA:   3'- -CGCGaaUUGCUGCUGCGCGGgCauuu -5'
22880 5' -52.6 NC_005137.2 + 107099 0.72 0.743736
Target:  5'- uGCGCUgguuggagGGCGAUGACcCGgCCGUAGAu -3'
miRNA:   3'- -CGCGAa-------UUGCUGCUGcGCgGGCAUUU- -5'
22880 5' -52.6 NC_005137.2 + 110643 0.72 0.743736
Target:  5'- cGCGCc-GACGGCGuuuggcuUGUGCCCGUGAc -3'
miRNA:   3'- -CGCGaaUUGCUGCu------GCGCGGGCAUUu -5'
22880 5' -52.6 NC_005137.2 + 130957 0.72 0.752722
Target:  5'- cGCGCUUuuauacaAGCGguuGACGCGCCCGa--- -3'
miRNA:   3'- -CGCGAA-------UUGCug-CUGCGCGGGCauuu -5'
22880 5' -52.6 NC_005137.2 + 56339 0.72 0.763579
Target:  5'- cGUGCUUGccuguuCGACGACGCGguaaCCCGUc-- -3'
miRNA:   3'- -CGCGAAUu-----GCUGCUGCGC----GGGCAuuu -5'
22880 5' -52.6 NC_005137.2 + 17518 0.71 0.782924
Target:  5'- uGCGCgUUAACGAgGGCGCGCUUa---- -3'
miRNA:   3'- -CGCG-AAUUGCUgCUGCGCGGGcauuu -5'
22880 5' -52.6 NC_005137.2 + 32881 0.71 0.792384
Target:  5'- cGCGCgu-ACGACGACGCGguagCCGg--- -3'
miRNA:   3'- -CGCGaauUGCUGCUGCGCg---GGCauuu -5'
22880 5' -52.6 NC_005137.2 + 20625 0.71 0.801691
Target:  5'- aGCGacaugGGCGugGugGCGCUCGUuGAa -3'
miRNA:   3'- -CGCgaa--UUGCugCugCGCGGGCAuUU- -5'
22880 5' -52.6 NC_005137.2 + 95290 0.71 0.819802
Target:  5'- cGCGaUUAagcACGACaACGCGCCCGUu-- -3'
miRNA:   3'- -CGCgAAU---UGCUGcUGCGCGGGCAuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.