miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22880 5' -52.6 NC_005137.2 + 2327 0.67 0.938823
Target:  5'- cGCGCUcGugGA-GGCGUGCauggCCGUAAAc -3'
miRNA:   3'- -CGCGAaUugCUgCUGCGCG----GGCAUUU- -5'
22880 5' -52.6 NC_005137.2 + 2434 0.67 0.95648
Target:  5'- aCGCggUGGcCGACGugccCGCGCCCGa--- -3'
miRNA:   3'- cGCGa-AUU-GCUGCu---GCGCGGGCauuu -5'
22880 5' -52.6 NC_005137.2 + 5114 0.66 0.973196
Target:  5'- -aGCUUucuuuUGAUGACGCGCgCCGa--- -3'
miRNA:   3'- cgCGAAuu---GCUGCUGCGCG-GGCauuu -5'
22880 5' -52.6 NC_005137.2 + 6612 0.68 0.933781
Target:  5'- cGCGCUgaAACGACGcGCGCGCagcaugaCGUu-- -3'
miRNA:   3'- -CGCGAa-UUGCUGC-UGCGCGg------GCAuuu -5'
22880 5' -52.6 NC_005137.2 + 6617 0.68 0.922932
Target:  5'- aCGCUUuuCGAuauCGACuGUGCUCGUAAAg -3'
miRNA:   3'- cGCGAAuuGCU---GCUG-CGCGGGCAUUU- -5'
22880 5' -52.6 NC_005137.2 + 7952 0.66 0.966864
Target:  5'- uGCGCgccGCGAccucgacCGGCG-GCCCGUGu- -3'
miRNA:   3'- -CGCGaauUGCU-------GCUGCgCGGGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 8456 0.67 0.93833
Target:  5'- uCGCUUAcgcaauuGCGACGcgccgauaACGUGCCCGa--- -3'
miRNA:   3'- cGCGAAU-------UGCUGC--------UGCGCGGGCauuu -5'
22880 5' -52.6 NC_005137.2 + 11294 0.66 0.96385
Target:  5'- gGCGCUgcGCGGCGGgaUGCGUaCGUGc- -3'
miRNA:   3'- -CGCGAauUGCUGCU--GCGCGgGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 13068 0.7 0.861746
Target:  5'- cGCGUUU-GCGAa-ACGCGCCCGa--- -3'
miRNA:   3'- -CGCGAAuUGCUgcUGCGCGGGCauuu -5'
22880 5' -52.6 NC_005137.2 + 17315 0.67 0.943611
Target:  5'- cGCGCUguGCGACGuGCGCGUCg----- -3'
miRNA:   3'- -CGCGAauUGCUGC-UGCGCGGgcauuu -5'
22880 5' -52.6 NC_005137.2 + 17518 0.71 0.782924
Target:  5'- uGCGCgUUAACGAgGGCGCGCUUa---- -3'
miRNA:   3'- -CGCG-AAUUGCUgCUGCGCGGGcauuu -5'
22880 5' -52.6 NC_005137.2 + 18243 0.69 0.898185
Target:  5'- uGCGCgucguucgUAcuGCGGCGcCGCGUCCGUu-- -3'
miRNA:   3'- -CGCGa-------AU--UGCUGCuGCGCGGGCAuuu -5'
22880 5' -52.6 NC_005137.2 + 18304 0.71 0.819802
Target:  5'- uGgGC--GugGACGACGUGCCCGc--- -3'
miRNA:   3'- -CgCGaaUugCUGCUGCGCGGGCauuu -5'
22880 5' -52.6 NC_005137.2 + 20625 0.71 0.801691
Target:  5'- aGCGacaugGGCGugGugGCGCUCGUuGAa -3'
miRNA:   3'- -CGCgaa--UUGCugCugCGCGGGCAuUU- -5'
22880 5' -52.6 NC_005137.2 + 22895 0.67 0.95648
Target:  5'- gGUGCU--GCGAuCGGCGCGCaacgCGUAc- -3'
miRNA:   3'- -CGCGAauUGCU-GCUGCGCGg---GCAUuu -5'
22880 5' -52.6 NC_005137.2 + 26303 0.72 0.743736
Target:  5'- cGCGUacAACGGCGGCGCGCUgGa--- -3'
miRNA:   3'- -CGCGaaUUGCUGCUGCGCGGgCauuu -5'
22880 5' -52.6 NC_005137.2 + 26660 0.68 0.933781
Target:  5'- aGCGCgaacACGACGACGCacGCaCGUGc- -3'
miRNA:   3'- -CGCGaau-UGCUGCUGCG--CGgGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 26700 0.68 0.917125
Target:  5'- gGCGCUgAACGGCGGCGaagaaG-CCGUGc- -3'
miRNA:   3'- -CGCGAaUUGCUGCUGCg----CgGGCAUuu -5'
22880 5' -52.6 NC_005137.2 + 27461 0.7 0.853771
Target:  5'- cGCGCaaUUGACGucGCGACGUGCgCCGc--- -3'
miRNA:   3'- -CGCG--AAUUGC--UGCUGCGCG-GGCauuu -5'
22880 5' -52.6 NC_005137.2 + 30738 0.76 0.52497
Target:  5'- gGCGUgaaugccGCGACG-CGCGCCCGUGc- -3'
miRNA:   3'- -CGCGaau----UGCUGCuGCGCGGGCAUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.