miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22882 3' -53.9 NC_005137.2 + 120734 0.66 0.966033
Target:  5'- -gGCCaCG-UAAUggggaauuugguuGCAAACGCGUCGGa -3'
miRNA:   3'- agCGG-GCaGUUG-------------UGUUUGCGCAGCCc -5'
22882 3' -53.9 NC_005137.2 + 119730 0.66 0.947592
Target:  5'- uUUGUgCGUCAGCGCGuagcggacgucAGCGCGcuggaGGGg -3'
miRNA:   3'- -AGCGgGCAGUUGUGU-----------UUGCGCag---CCC- -5'
22882 3' -53.9 NC_005137.2 + 118145 0.66 0.96305
Target:  5'- gCGCCCGUgAuC-CAGAUuGCGcCGGGc -3'
miRNA:   3'- aGCGGGCAgUuGuGUUUG-CGCaGCCC- -5'
22882 3' -53.9 NC_005137.2 + 117837 0.68 0.911419
Target:  5'- cCGCCacCGgggcaaccacCAGCACGGACGCGUCcGGc -3'
miRNA:   3'- aGCGG--GCa---------GUUGUGUUUGCGCAGcCC- -5'
22882 3' -53.9 NC_005137.2 + 115741 0.66 0.96305
Target:  5'- aCGCCaagGUgCAACGCAAcguGCGCGcgCGGc -3'
miRNA:   3'- aGCGGg--CA-GUUGUGUU---UGCGCa-GCCc -5'
22882 3' -53.9 NC_005137.2 + 110947 0.68 0.892314
Target:  5'- gUGCCCGUCGAUcaACAGAgGCuuauuuaugCGGGc -3'
miRNA:   3'- aGCGGGCAGUUG--UGUUUgCGca-------GCCC- -5'
22882 3' -53.9 NC_005137.2 + 110628 0.66 0.947592
Target:  5'- aCGgCCGU--GCACAAACGCGcCGa- -3'
miRNA:   3'- aGCgGGCAguUGUGUUUGCGCaGCcc -5'
22882 3' -53.9 NC_005137.2 + 109007 0.69 0.863632
Target:  5'- aCGCUgGUCAuCGCGAuaACGCGcgUGGGu -3'
miRNA:   3'- aGCGGgCAGUuGUGUU--UGCGCa-GCCC- -5'
22882 3' -53.9 NC_005137.2 + 108037 0.66 0.962016
Target:  5'- aUCGCCCGUgucuagagaagaaaCuuuGCGCGuggaacACGCGacgCGGGg -3'
miRNA:   3'- -AGCGGGCA--------------Gu--UGUGUu-----UGCGCa--GCCC- -5'
22882 3' -53.9 NC_005137.2 + 103563 0.7 0.814418
Target:  5'- aUUGCgCGUaCGAgACAAGCGCGU-GGGc -3'
miRNA:   3'- -AGCGgGCA-GUUgUGUUUGCGCAgCCC- -5'
22882 3' -53.9 NC_005137.2 + 101331 0.67 0.92837
Target:  5'- aCG-CCGUCAACGCAAcCGCaaacgaGUaCGGGc -3'
miRNA:   3'- aGCgGGCAGUUGUGUUuGCG------CA-GCCC- -5'
22882 3' -53.9 NC_005137.2 + 100254 0.69 0.871133
Target:  5'- -gGCgCCG-CAACGCAcgggcGCGCGUCGcGGc -3'
miRNA:   3'- agCG-GGCaGUUGUGUu----UGCGCAGC-CC- -5'
22882 3' -53.9 NC_005137.2 + 100147 0.69 0.855919
Target:  5'- cUCGCCCacg--UACGGGCGCGcCGGGu -3'
miRNA:   3'- -AGCGGGcaguuGUGUUUGCGCaGCCC- -5'
22882 3' -53.9 NC_005137.2 + 99871 0.68 0.916732
Target:  5'- cUGUCCGUCAaacucguACACcGACGCaUCGGu -3'
miRNA:   3'- aGCGGGCAGU-------UGUGuUUGCGcAGCCc -5'
22882 3' -53.9 NC_005137.2 + 98122 0.66 0.959526
Target:  5'- cCGCCggcuaccgCGUCGuCGUAcGCGCGUUGGGa -3'
miRNA:   3'- aGCGG--------GCAGUuGUGUuUGCGCAGCCC- -5'
22882 3' -53.9 NC_005137.2 + 98006 0.66 0.959526
Target:  5'- gCGCCCGccaaGugGCcAGCGUgcacGUCGGGc -3'
miRNA:   3'- aGCGGGCag--UugUGuUUGCG----CAGCCC- -5'
22882 3' -53.9 NC_005137.2 + 97933 0.66 0.959526
Target:  5'- -gGCgUGUCAaguacuugcuGCACAaucucuagAACGCGUCGGc -3'
miRNA:   3'- agCGgGCAGU----------UGUGU--------UUGCGCAGCCc -5'
22882 3' -53.9 NC_005137.2 + 96022 0.69 0.878417
Target:  5'- gUUGCCCGUCGcCACAAACGgGaacgCGa- -3'
miRNA:   3'- -AGCGGGCAGUuGUGUUUGCgCa---GCcc -5'
22882 3' -53.9 NC_005137.2 + 93508 0.72 0.719985
Target:  5'- gUCGUagCCGaCGGCGCAAaugcACGCGUCGGc -3'
miRNA:   3'- -AGCG--GGCaGUUGUGUU----UGCGCAGCCc -5'
22882 3' -53.9 NC_005137.2 + 93427 0.68 0.911419
Target:  5'- gCGCCUGUacaAACcCGAcAUGCGuUCGGGg -3'
miRNA:   3'- aGCGGGCAg--UUGuGUU-UGCGC-AGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.