miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22883 5' -54.1 NC_005137.2 + 67076 1.15 0.00183
Target:  5'- gGGACAUUCGCGCACCGCGUGCGAACCg -3'
miRNA:   3'- -CCUGUAAGCGCGUGGCGCACGCUUGG- -5'
22883 5' -54.1 NC_005137.2 + 34621 0.9 0.081607
Target:  5'- cGGACAauuugauuggcggUUUGCGCGCCGUGUGCGAGCg -3'
miRNA:   3'- -CCUGU-------------AAGCGCGUGGCGCACGCUUGg -5'
22883 5' -54.1 NC_005137.2 + 63645 0.78 0.409526
Target:  5'- cGACggUCGCGCAUCGCGUcgcgcccGCGGucACCg -3'
miRNA:   3'- cCUGuaAGCGCGUGGCGCA-------CGCU--UGG- -5'
22883 5' -54.1 NC_005137.2 + 114093 0.77 0.428096
Target:  5'- uGAUcaGUUCGCcgaGCGCCGCGUGCGucugcACCg -3'
miRNA:   3'- cCUG--UAAGCG---CGUGGCGCACGCu----UGG- -5'
22883 5' -54.1 NC_005137.2 + 30971 0.76 0.464799
Target:  5'- ------cCGCGCGCCGCGU-CGGACCg -3'
miRNA:   3'- ccuguaaGCGCGUGGCGCAcGCUUGG- -5'
22883 5' -54.1 NC_005137.2 + 34524 0.75 0.532655
Target:  5'- uGGACAcgaCGCGCACCGUGUuGCGuucGCg -3'
miRNA:   3'- -CCUGUaa-GCGCGUGGCGCA-CGCu--UGg -5'
22883 5' -54.1 NC_005137.2 + 88498 0.75 0.542656
Target:  5'- uGGACGgaaugUCGCcgcgcagcaaGCGCCGUGUGCGuucCCa -3'
miRNA:   3'- -CCUGUa----AGCG----------CGUGGCGCACGCuu-GG- -5'
22883 5' -54.1 NC_005137.2 + 31720 0.75 0.552719
Target:  5'- -cACGUUCGCGUcguuUCGCGUGCGuauAGCCg -3'
miRNA:   3'- ccUGUAAGCGCGu---GGCGCACGC---UUGG- -5'
22883 5' -54.1 NC_005137.2 + 24153 0.73 0.665553
Target:  5'- cGGccACAaucugCGCGUACUGCGUGCGcAACUc -3'
miRNA:   3'- -CC--UGUaa---GCGCGUGGCGCACGC-UUGG- -5'
22883 5' -54.1 NC_005137.2 + 17305 0.73 0.67581
Target:  5'- aGGACAUUgaCGCGCugUGCGacgUGCGcgUCg -3'
miRNA:   3'- -CCUGUAA--GCGCGugGCGC---ACGCuuGG- -5'
22883 5' -54.1 NC_005137.2 + 95514 0.72 0.705316
Target:  5'- uGACGUggccgguggcgacUUGCGCugCGUGUGCGAcgaagGCUa -3'
miRNA:   3'- cCUGUA-------------AGCGCGugGCGCACGCU-----UGG- -5'
22883 5' -54.1 NC_005137.2 + 70584 0.71 0.746077
Target:  5'- -uGCGUUCGUGCugCGCGgGCG-GCUu -3'
miRNA:   3'- ccUGUAAGCGCGugGCGCaCGCuUGG- -5'
22883 5' -54.1 NC_005137.2 + 58208 0.71 0.755785
Target:  5'- aGACGgcagCGCGCGCCgccaacGCGUGgGuGACCg -3'
miRNA:   3'- cCUGUaa--GCGCGUGG------CGCACgC-UUGG- -5'
22883 5' -54.1 NC_005137.2 + 106582 0.71 0.755785
Target:  5'- uGGACAUUuaCG-GCGCCGCGguguugacgaUGCGuAGCCc -3'
miRNA:   3'- -CCUGUAA--GCgCGUGGCGC----------ACGC-UUGG- -5'
22883 5' -54.1 NC_005137.2 + 68652 0.7 0.793413
Target:  5'- cGACAUcaacaacgUGCGCACgCGCGUGgCGGAUg -3'
miRNA:   3'- cCUGUAa-------GCGCGUG-GCGCAC-GCUUGg -5'
22883 5' -54.1 NC_005137.2 + 79580 0.7 0.793413
Target:  5'- -----cUUGCGCGCCGCcGUGCGAuaGCg -3'
miRNA:   3'- ccuguaAGCGCGUGGCG-CACGCU--UGg -5'
22883 5' -54.1 NC_005137.2 + 85899 0.7 0.802474
Target:  5'- cGACGcgUCGCGCGcCCGCGagugGCaGAGCa -3'
miRNA:   3'- cCUGUa-AGCGCGU-GGCGCa---CG-CUUGg -5'
22883 5' -54.1 NC_005137.2 + 30736 0.7 0.811377
Target:  5'- uGGGCGUgaaugccgcgaCGCGCGCC-CGUGCGuugcggcGCCc -3'
miRNA:   3'- -CCUGUAa----------GCGCGUGGcGCACGCu------UGG- -5'
22883 5' -54.1 NC_005137.2 + 96919 0.7 0.828681
Target:  5'- aGGCuauuuguUUCGCGC-CCGCGUGUgcauGAACa -3'
miRNA:   3'- cCUGu------AAGCGCGuGGCGCACG----CUUGg -5'
22883 5' -54.1 NC_005137.2 + 24722 0.7 0.828681
Target:  5'- aGACAUUgGCGCcguggggcAUCGCGUGCcuGGACa -3'
miRNA:   3'- cCUGUAAgCGCG--------UGGCGCACG--CUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.