Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22883 | 5' | -54.1 | NC_005137.2 | + | 63645 | 0.78 | 0.409526 |
Target: 5'- cGACggUCGCGCAUCGCGUcgcgcccGCGGucACCg -3' miRNA: 3'- cCUGuaAGCGCGUGGCGCA-------CGCU--UGG- -5' |
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22883 | 5' | -54.1 | NC_005137.2 | + | 33937 | 0.68 | 0.903216 |
Target: 5'- cGGCAUUCGCGCGCaCGUaUuuGAACa -3' miRNA: 3'- cCUGUAAGCGCGUG-GCGcAcgCUUGg -5' |
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22883 | 5' | -54.1 | NC_005137.2 | + | 98027 | 0.68 | 0.890069 |
Target: 5'- -uGCAcgUCGgGCGCUGCGaGCGggUCc -3' miRNA: 3'- ccUGUa-AGCgCGUGGCGCaCGCuuGG- -5' |
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22883 | 5' | -54.1 | NC_005137.2 | + | 130620 | 0.68 | 0.885249 |
Target: 5'- cGGACA--CGCGCGCCGacaaagccagcaaaaGCGAGCUc -3' miRNA: 3'- -CCUGUaaGCGCGUGGCgca------------CGCUUGG- -5' |
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22883 | 5' | -54.1 | NC_005137.2 | + | 46167 | 0.68 | 0.883149 |
Target: 5'- cGGACG--UGCGCAUCaacaaGUGCGAcACCg -3' miRNA: 3'- -CCUGUaaGCGCGUGGcg---CACGCU-UGG- -5' |
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22883 | 5' | -54.1 | NC_005137.2 | + | 21230 | 0.68 | 0.883149 |
Target: 5'- uGGGCGacgcUGCGgGCCGCGUGUc-ACCa -3' miRNA: 3'- -CCUGUaa--GCGCgUGGCGCACGcuUGG- -5' |
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22883 | 5' | -54.1 | NC_005137.2 | + | 48778 | 0.68 | 0.876002 |
Target: 5'- uGGACGcggCGcCGCACagCGUGUGCGGcACUa -3' miRNA: 3'- -CCUGUaa-GC-GCGUG--GCGCACGCU-UGG- -5' |
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22883 | 5' | -54.1 | NC_005137.2 | + | 33204 | 0.69 | 0.868634 |
Target: 5'- -cGCGUcgaagaGCGCACCGCGgucgaGAACCa -3' miRNA: 3'- ccUGUAag----CGCGUGGCGCacg--CUUGG- -5' |
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22883 | 5' | -54.1 | NC_005137.2 | + | 88015 | 0.69 | 0.86105 |
Target: 5'- gGGAUugccggCGCGgcCACCGCcgagGCGGGCCa -3' miRNA: 3'- -CCUGuaa---GCGC--GUGGCGca--CGCUUGG- -5' |
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22883 | 5' | -54.1 | NC_005137.2 | + | 96919 | 0.7 | 0.828681 |
Target: 5'- aGGCuauuuguUUCGCGC-CCGCGUGUgcauGAACa -3' miRNA: 3'- cCUGu------AAGCGCGuGGCGCACG----CUUGg -5' |
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22883 | 5' | -54.1 | NC_005137.2 | + | 79580 | 0.7 | 0.793413 |
Target: 5'- -----cUUGCGCGCCGCcGUGCGAuaGCg -3' miRNA: 3'- ccuguaAGCGCGUGGCG-CACGCU--UGg -5' |
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22883 | 5' | -54.1 | NC_005137.2 | + | 68652 | 0.7 | 0.793413 |
Target: 5'- cGACAUcaacaacgUGCGCACgCGCGUGgCGGAUg -3' miRNA: 3'- cCUGUAa-------GCGCGUG-GCGCAC-GCUUGg -5' |
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22883 | 5' | -54.1 | NC_005137.2 | + | 106582 | 0.71 | 0.755785 |
Target: 5'- uGGACAUUuaCG-GCGCCGCGguguugacgaUGCGuAGCCc -3' miRNA: 3'- -CCUGUAA--GCgCGUGGCGC----------ACGC-UUGG- -5' |
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22883 | 5' | -54.1 | NC_005137.2 | + | 70584 | 0.71 | 0.746077 |
Target: 5'- -uGCGUUCGUGCugCGCGgGCG-GCUu -3' miRNA: 3'- ccUGUAAGCGCGugGCGCaCGCuUGG- -5' |
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22883 | 5' | -54.1 | NC_005137.2 | + | 95514 | 0.72 | 0.705316 |
Target: 5'- uGACGUggccgguggcgacUUGCGCugCGUGUGCGAcgaagGCUa -3' miRNA: 3'- cCUGUA-------------AGCGCGugGCGCACGCU-----UGG- -5' |
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22883 | 5' | -54.1 | NC_005137.2 | + | 17305 | 0.73 | 0.67581 |
Target: 5'- aGGACAUUgaCGCGCugUGCGacgUGCGcgUCg -3' miRNA: 3'- -CCUGUAA--GCGCGugGCGC---ACGCuuGG- -5' |
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22883 | 5' | -54.1 | NC_005137.2 | + | 31720 | 0.75 | 0.552719 |
Target: 5'- -cACGUUCGCGUcguuUCGCGUGCGuauAGCCg -3' miRNA: 3'- ccUGUAAGCGCGu---GGCGCACGC---UUGG- -5' |
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22883 | 5' | -54.1 | NC_005137.2 | + | 88498 | 0.75 | 0.542656 |
Target: 5'- uGGACGgaaugUCGCcgcgcagcaaGCGCCGUGUGCGuucCCa -3' miRNA: 3'- -CCUGUa----AGCG----------CGUGGCGCACGCuu-GG- -5' |
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22883 | 5' | -54.1 | NC_005137.2 | + | 114093 | 0.77 | 0.428096 |
Target: 5'- uGAUcaGUUCGCcgaGCGCCGCGUGCGucugcACCg -3' miRNA: 3'- cCUG--UAAGCG---CGUGGCGCACGCu----UGG- -5' |
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22883 | 5' | -54.1 | NC_005137.2 | + | 34621 | 0.9 | 0.081607 |
Target: 5'- cGGACAauuugauuggcggUUUGCGCGCCGUGUGCGAGCg -3' miRNA: 3'- -CCUGU-------------AAGCGCGUGGCGCACGCUUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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