miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22883 5' -54.1 NC_005137.2 + 42135 0.68 0.903216
Target:  5'- -uGCGUUCGaCGCguggaACCGcCGUG-GAACCa -3'
miRNA:   3'- ccUGUAAGC-GCG-----UGGC-GCACgCUUGG- -5'
22883 5' -54.1 NC_005137.2 + 88015 0.69 0.86105
Target:  5'- gGGAUugccggCGCGgcCACCGCcgagGCGGGCCa -3'
miRNA:   3'- -CCUGuaa---GCGC--GUGGCGca--CGCUUGG- -5'
22883 5' -54.1 NC_005137.2 + 33204 0.69 0.868634
Target:  5'- -cGCGUcgaagaGCGCACCGCGgucgaGAACCa -3'
miRNA:   3'- ccUGUAag----CGCGUGGCGCacg--CUUGG- -5'
22883 5' -54.1 NC_005137.2 + 48778 0.68 0.876002
Target:  5'- uGGACGcggCGcCGCACagCGUGUGCGGcACUa -3'
miRNA:   3'- -CCUGUaa-GC-GCGUG--GCGCACGCU-UGG- -5'
22883 5' -54.1 NC_005137.2 + 21230 0.68 0.883149
Target:  5'- uGGGCGacgcUGCGgGCCGCGUGUc-ACCa -3'
miRNA:   3'- -CCUGUaa--GCGCgUGGCGCACGcuUGG- -5'
22883 5' -54.1 NC_005137.2 + 46167 0.68 0.883149
Target:  5'- cGGACG--UGCGCAUCaacaaGUGCGAcACCg -3'
miRNA:   3'- -CCUGUaaGCGCGUGGcg---CACGCU-UGG- -5'
22883 5' -54.1 NC_005137.2 + 130620 0.68 0.885249
Target:  5'- cGGACA--CGCGCGCCGacaaagccagcaaaaGCGAGCUc -3'
miRNA:   3'- -CCUGUaaGCGCGUGGCgca------------CGCUUGG- -5'
22883 5' -54.1 NC_005137.2 + 98027 0.68 0.890069
Target:  5'- -uGCAcgUCGgGCGCUGCGaGCGggUCc -3'
miRNA:   3'- ccUGUa-AGCgCGUGGCGCaCGCuuGG- -5'
22883 5' -54.1 NC_005137.2 + 33937 0.68 0.903216
Target:  5'- cGGCAUUCGCGCGCaCGUaUuuGAACa -3'
miRNA:   3'- cCUGUAAGCGCGUG-GCGcAcgCUUGg -5'
22883 5' -54.1 NC_005137.2 + 96919 0.7 0.828681
Target:  5'- aGGCuauuuguUUCGCGC-CCGCGUGUgcauGAACa -3'
miRNA:   3'- cCUGu------AAGCGCGuGGCGCACG----CUUGg -5'
22883 5' -54.1 NC_005137.2 + 79580 0.7 0.793413
Target:  5'- -----cUUGCGCGCCGCcGUGCGAuaGCg -3'
miRNA:   3'- ccuguaAGCGCGUGGCG-CACGCU--UGg -5'
22883 5' -54.1 NC_005137.2 + 68652 0.7 0.793413
Target:  5'- cGACAUcaacaacgUGCGCACgCGCGUGgCGGAUg -3'
miRNA:   3'- cCUGUAa-------GCGCGUG-GCGCAC-GCUUGg -5'
22883 5' -54.1 NC_005137.2 + 63645 0.78 0.409526
Target:  5'- cGACggUCGCGCAUCGCGUcgcgcccGCGGucACCg -3'
miRNA:   3'- cCUGuaAGCGCGUGGCGCA-------CGCU--UGG- -5'
22883 5' -54.1 NC_005137.2 + 114093 0.77 0.428096
Target:  5'- uGAUcaGUUCGCcgaGCGCCGCGUGCGucugcACCg -3'
miRNA:   3'- cCUG--UAAGCG---CGUGGCGCACGCu----UGG- -5'
22883 5' -54.1 NC_005137.2 + 88498 0.75 0.542656
Target:  5'- uGGACGgaaugUCGCcgcgcagcaaGCGCCGUGUGCGuucCCa -3'
miRNA:   3'- -CCUGUa----AGCG----------CGUGGCGCACGCuu-GG- -5'
22883 5' -54.1 NC_005137.2 + 31720 0.75 0.552719
Target:  5'- -cACGUUCGCGUcguuUCGCGUGCGuauAGCCg -3'
miRNA:   3'- ccUGUAAGCGCGu---GGCGCACGC---UUGG- -5'
22883 5' -54.1 NC_005137.2 + 17305 0.73 0.67581
Target:  5'- aGGACAUUgaCGCGCugUGCGacgUGCGcgUCg -3'
miRNA:   3'- -CCUGUAA--GCGCGugGCGC---ACGCuuGG- -5'
22883 5' -54.1 NC_005137.2 + 95514 0.72 0.705316
Target:  5'- uGACGUggccgguggcgacUUGCGCugCGUGUGCGAcgaagGCUa -3'
miRNA:   3'- cCUGUA-------------AGCGCGugGCGCACGCU-----UGG- -5'
22883 5' -54.1 NC_005137.2 + 70584 0.71 0.746077
Target:  5'- -uGCGUUCGUGCugCGCGgGCG-GCUu -3'
miRNA:   3'- ccUGUAAGCGCGugGCGCaCGCuUGG- -5'
22883 5' -54.1 NC_005137.2 + 106582 0.71 0.755785
Target:  5'- uGGACAUUuaCG-GCGCCGCGguguugacgaUGCGuAGCCc -3'
miRNA:   3'- -CCUGUAA--GCgCGUGGCGC----------ACGC-UUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.