miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22883 5' -54.1 NC_005137.2 + 1846 0.66 0.950495
Target:  5'- cGACGa--GUGCACCGuCGUcGCGGcGCCu -3'
miRNA:   3'- cCUGUaagCGCGUGGC-GCA-CGCU-UGG- -5'
22883 5' -54.1 NC_005137.2 + 2462 0.67 0.921151
Target:  5'- cGACcacucuaUCGCGCgcuauuuaugcGCCGCGUGCGGcaugguGCUg -3'
miRNA:   3'- cCUGua-----AGCGCG-----------UGGCGCACGCU------UGG- -5'
22883 5' -54.1 NC_005137.2 + 5884 0.67 0.936908
Target:  5'- aGACGUUCGaGCGgCGCG-GCccGCCg -3'
miRNA:   3'- cCUGUAAGCgCGUgGCGCaCGcuUGG- -5'
22883 5' -54.1 NC_005137.2 + 10706 0.66 0.950495
Target:  5'- uGGCGUUCGauggcgugcacCGCAUCGCGcacGCGucgGCCa -3'
miRNA:   3'- cCUGUAAGC-----------GCGUGGCGCa--CGCu--UGG- -5'
22883 5' -54.1 NC_005137.2 + 11145 0.67 0.931899
Target:  5'- -aACGUUUGUugGCugCGCGUGCc-ACCa -3'
miRNA:   3'- ccUGUAAGCG--CGugGCGCACGcuUGG- -5'
22883 5' -54.1 NC_005137.2 + 14711 0.67 0.915414
Target:  5'- cGGACAUUUgGCGU---GCGUGCuGGCCg -3'
miRNA:   3'- -CCUGUAAG-CGCGuggCGCACGcUUGG- -5'
22883 5' -54.1 NC_005137.2 + 17305 0.73 0.67581
Target:  5'- aGGACAUUgaCGCGCugUGCGacgUGCGcgUCg -3'
miRNA:   3'- -CCUGUAA--GCGCGugGCGC---ACGCuuGG- -5'
22883 5' -54.1 NC_005137.2 + 18122 0.69 0.867885
Target:  5'- cGGGUA--CGCGCAgcCCGCGUGCuaucacuuggaccGAGCCg -3'
miRNA:   3'- -CCUGUaaGCGCGU--GGCGCACG-------------CUUGG- -5'
22883 5' -54.1 NC_005137.2 + 18604 0.66 0.95455
Target:  5'- -cACAaUgGCGCGCCGUGcGCGAucGCg -3'
miRNA:   3'- ccUGUaAgCGCGUGGCGCaCGCU--UGg -5'
22883 5' -54.1 NC_005137.2 + 20432 0.66 0.946204
Target:  5'- aGGAUGggCGCGCcaagaCGCagGUGCGGGCg -3'
miRNA:   3'- -CCUGUaaGCGCGug---GCG--CACGCUUGg -5'
22883 5' -54.1 NC_005137.2 + 21230 0.68 0.883149
Target:  5'- uGGGCGacgcUGCGgGCCGCGUGUc-ACCa -3'
miRNA:   3'- -CCUGUaa--GCGCgUGGCGCACGcuUGG- -5'
22883 5' -54.1 NC_005137.2 + 21584 0.66 0.941676
Target:  5'- uGGGC---CGCGCauagGCCGCGguuuUGaCGAGCCc -3'
miRNA:   3'- -CCUGuaaGCGCG----UGGCGC----AC-GCUUGG- -5'
22883 5' -54.1 NC_005137.2 + 22105 0.67 0.915414
Target:  5'- -aGCGUUCGUGCggccuuguaagaACCGCGUcaaGCGuuGCCc -3'
miRNA:   3'- ccUGUAAGCGCG------------UGGCGCA---CGCu-UGG- -5'
22883 5' -54.1 NC_005137.2 + 24153 0.73 0.665553
Target:  5'- cGGccACAaucugCGCGUACUGCGUGCGcAACUc -3'
miRNA:   3'- -CC--UGUaa---GCGCGUGGCGCACGC-UUGG- -5'
22883 5' -54.1 NC_005137.2 + 24304 0.68 0.876002
Target:  5'- cGGCGUUUGCG-GCUGCGguggugGCGGGCa -3'
miRNA:   3'- cCUGUAAGCGCgUGGCGCa-----CGCUUGg -5'
22883 5' -54.1 NC_005137.2 + 24722 0.7 0.828681
Target:  5'- aGACAUUgGCGCcguggggcAUCGCGUGCcuGGACa -3'
miRNA:   3'- cCUGUAAgCGCG--------UGGCGCACG--CUUGg -5'
22883 5' -54.1 NC_005137.2 + 30736 0.7 0.811377
Target:  5'- uGGGCGUgaaugccgcgaCGCGCGCC-CGUGCGuugcggcGCCc -3'
miRNA:   3'- -CCUGUAa----------GCGCGUGGcGCACGCu------UGG- -5'
22883 5' -54.1 NC_005137.2 + 30933 0.69 0.845258
Target:  5'- -cACGUgCGCGCGCCGCGgcacaaagcaUGCuGAACg -3'
miRNA:   3'- ccUGUAaGCGCGUGGCGC----------ACG-CUUGg -5'
22883 5' -54.1 NC_005137.2 + 30971 0.76 0.464799
Target:  5'- ------cCGCGCGCCGCGU-CGGACCg -3'
miRNA:   3'- ccuguaaGCGCGUGGCGCAcGCUUGG- -5'
22883 5' -54.1 NC_005137.2 + 31720 0.75 0.552719
Target:  5'- -cACGUUCGCGUcguuUCGCGUGCGuauAGCCg -3'
miRNA:   3'- ccUGUAAGCGCGu---GGCGCACGC---UUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.