miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22886 3' -53.6 NC_005137.2 + 113177 0.66 0.934512
Target:  5'- uUGCGUUCGUAAGGU--CGaCGGCGg-- -3'
miRNA:   3'- -ACGCAAGCGUUCUAacGC-GUCGCguu -5'
22886 3' -53.6 NC_005137.2 + 25684 0.66 0.929156
Target:  5'- gGCGUUUGCAgacaagguGGAUUGggaCGCGGUGUc- -3'
miRNA:   3'- aCGCAAGCGU--------UCUAAC---GCGUCGCGuu -5'
22886 3' -53.6 NC_005137.2 + 75584 0.66 0.923536
Target:  5'- gGCGgaCGCGGGcg-GCGCcguGCGCGu -3'
miRNA:   3'- aCGCaaGCGUUCuaaCGCGu--CGCGUu -5'
22886 3' -53.6 NC_005137.2 + 74753 0.66 0.917651
Target:  5'- -cCGUU-GCAAcAUUGCGCGGUGCGg -3'
miRNA:   3'- acGCAAgCGUUcUAACGCGUCGCGUu -5'
22886 3' -53.6 NC_005137.2 + 124928 0.66 0.917048
Target:  5'- cGCGUugaugugcuugaUCGCcGGGUUGCgaugaacGCGGCGCc- -3'
miRNA:   3'- aCGCA------------AGCGuUCUAACG-------CGUCGCGuu -5'
22886 3' -53.6 NC_005137.2 + 58656 0.66 0.911503
Target:  5'- aGCGUgcaCGC-GGAgcgGCGCAgcucGCGCAAu -3'
miRNA:   3'- aCGCAa--GCGuUCUaa-CGCGU----CGCGUU- -5'
22886 3' -53.6 NC_005137.2 + 110712 0.67 0.884321
Target:  5'- cGCGUgCGCAAcGGUgUGCGCgcagAGCGCu- -3'
miRNA:   3'- aCGCAaGCGUU-CUA-ACGCG----UCGCGuu -5'
22886 3' -53.6 NC_005137.2 + 78153 0.67 0.884321
Target:  5'- -aCGUUUGCAaauAGAUUGCGuCAcGCGCu- -3'
miRNA:   3'- acGCAAGCGU---UCUAACGC-GU-CGCGuu -5'
22886 3' -53.6 NC_005137.2 + 112457 0.67 0.876897
Target:  5'- cGCGgcgGCAGGAUggGCGaCGGCGCc- -3'
miRNA:   3'- aCGCaagCGUUCUAa-CGC-GUCGCGuu -5'
22886 3' -53.6 NC_005137.2 + 32419 0.68 0.861329
Target:  5'- gGCGcUUUGCGAGG-UGCGCAacaGUGCGu -3'
miRNA:   3'- aCGC-AAGCGUUCUaACGCGU---CGCGUu -5'
22886 3' -53.6 NC_005137.2 + 86875 0.68 0.861329
Target:  5'- uUGCGaUCGCAccGUUGCGguGCGa-- -3'
miRNA:   3'- -ACGCaAGCGUucUAACGCguCGCguu -5'
22886 3' -53.6 NC_005137.2 + 5250 0.68 0.861329
Target:  5'- cGCGc-CGCucGAaacGCGCGGCGCAAg -3'
miRNA:   3'- aCGCaaGCGuuCUaa-CGCGUCGCGUU- -5'
22886 3' -53.6 NC_005137.2 + 34958 0.68 0.853199
Target:  5'- aGCGUUCGUcgcuAAG-UUGgGCGGCGguGg -3'
miRNA:   3'- aCGCAAGCG----UUCuAACgCGUCGCguU- -5'
22886 3' -53.6 NC_005137.2 + 72094 0.68 0.844847
Target:  5'- cGCGUUucuggcgaacCGCAAGAUUGUGagcguuGUGCAAa -3'
miRNA:   3'- aCGCAA----------GCGUUCUAACGCgu----CGCGUU- -5'
22886 3' -53.6 NC_005137.2 + 11765 0.68 0.844847
Target:  5'- aGCGUUUauaaagGCuGGAagUGCGCAGuCGCAAg -3'
miRNA:   3'- aCGCAAG------CGuUCUa-ACGCGUC-GCGUU- -5'
22886 3' -53.6 NC_005137.2 + 100023 0.68 0.831043
Target:  5'- aGCGgugCGCAAGcacgcgguccgacgcGgcGCGCGGCGCGu -3'
miRNA:   3'- aCGCaa-GCGUUC---------------UaaCGCGUCGCGUu -5'
22886 3' -53.6 NC_005137.2 + 35814 0.68 0.82751
Target:  5'- cGCGUU-GCAAucuGcgUGCGUAGUGCAc -3'
miRNA:   3'- aCGCAAgCGUU---CuaACGCGUCGCGUu -5'
22886 3' -53.6 NC_005137.2 + 76635 0.69 0.818543
Target:  5'- cGCGcuagcUUCGCu---UUGCGCGGCGCu- -3'
miRNA:   3'- aCGC-----AAGCGuucuAACGCGUCGCGuu -5'
22886 3' -53.6 NC_005137.2 + 125033 0.69 0.809387
Target:  5'- gGCGUggCGCAggcaacggagccGGGcgGCGCGGCGCc- -3'
miRNA:   3'- aCGCAa-GCGU------------UCUaaCGCGUCGCGuu -5'
22886 3' -53.6 NC_005137.2 + 22829 0.69 0.780895
Target:  5'- cGCGUUgccaaaCGCGAGGgcggGCGC-GCGCAu -3'
miRNA:   3'- aCGCAA------GCGUUCUaa--CGCGuCGCGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.