miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22890 3' -55.7 NC_005137.2 + 33247 0.7 0.659607
Target:  5'- --uCGCAGCgaGCGCcuGGCUGUUCgagGCCCg -3'
miRNA:   3'- uuuGCGUUGg-CGCG--UCGGCAAG---UGGG- -5'
22890 3' -55.7 NC_005137.2 + 116884 0.7 0.659607
Target:  5'- -uGCGCugccCCGCGacuugacaaCGGCCG-UCACCCg -3'
miRNA:   3'- uuUGCGuu--GGCGC---------GUCGGCaAGUGGG- -5'
22890 3' -55.7 NC_005137.2 + 43809 0.7 0.690631
Target:  5'- ---aGCGACgGCacgaGCAGCCGcccgCGCCCg -3'
miRNA:   3'- uuugCGUUGgCG----CGUCGGCaa--GUGGG- -5'
22890 3' -55.7 NC_005137.2 + 109776 0.7 0.690631
Target:  5'- uGACaGCGGCC-CGCAGCg--UCGCCCa -3'
miRNA:   3'- uUUG-CGUUGGcGCGUCGgcaAGUGGG- -5'
22890 3' -55.7 NC_005137.2 + 13705 0.69 0.711077
Target:  5'- uGGGCGCGACCGCGUuguuGCUauuUUUugCCg -3'
miRNA:   3'- -UUUGCGUUGGCGCGu---CGGc--AAGugGG- -5'
22890 3' -55.7 NC_005137.2 + 30963 0.69 0.711077
Target:  5'- uGAACGC-GCCGCGC-GCCGcgUCGgaCCg -3'
miRNA:   3'- -UUUGCGuUGGCGCGuCGGCa-AGUg-GG- -5'
22890 3' -55.7 NC_005137.2 + 56876 0.69 0.721201
Target:  5'- uAAAUGCAACCGUGCcguGCCGgcgcgaaaGCCa -3'
miRNA:   3'- -UUUGCGUUGGCGCGu--CGGCaag-----UGGg -5'
22890 3' -55.7 NC_005137.2 + 20563 0.69 0.731245
Target:  5'- -cGCGcCGGCCGCGguGugcacgcucaCCGUcgCGCCCg -3'
miRNA:   3'- uuUGC-GUUGGCGCguC----------GGCAa-GUGGG- -5'
22890 3' -55.7 NC_005137.2 + 129503 0.69 0.731245
Target:  5'- cAACGCGucggcGCCGCGCGGCgGaaugUACCg -3'
miRNA:   3'- uUUGCGU-----UGGCGCGUCGgCaa--GUGGg -5'
22890 3' -55.7 NC_005137.2 + 115752 0.69 0.731245
Target:  5'- cAACGCAACgugcgCGCGCGGC-GUUUuCCCu -3'
miRNA:   3'- uUUGCGUUG-----GCGCGUCGgCAAGuGGG- -5'
22890 3' -55.7 NC_005137.2 + 66697 0.69 0.741201
Target:  5'- ---gGCAAauUgGCGCAGCgCGcgUCACCCg -3'
miRNA:   3'- uuugCGUU--GgCGCGUCG-GCa-AGUGGG- -5'
22890 3' -55.7 NC_005137.2 + 119715 0.69 0.741201
Target:  5'- -uACGCAucccGCCGCGCAGC-----GCCCa -3'
miRNA:   3'- uuUGCGU----UGGCGCGUCGgcaagUGGG- -5'
22890 3' -55.7 NC_005137.2 + 31190 0.69 0.741201
Target:  5'- cGGCGCAACCG-GC--CCGcgUCGCCCu -3'
miRNA:   3'- uUUGCGUUGGCgCGucGGCa-AGUGGG- -5'
22890 3' -55.7 NC_005137.2 + 8056 0.68 0.770436
Target:  5'- --uUGCAACCGCGCAacGCCuUUUauacuuGCCCc -3'
miRNA:   3'- uuuGCGUUGGCGCGU--CGGcAAG------UGGG- -5'
22890 3' -55.7 NC_005137.2 + 122241 0.68 0.770436
Target:  5'- ---aGCAGCagacaaGCGuCAGCCGUcUCGCCg -3'
miRNA:   3'- uuugCGUUGg-----CGC-GUCGGCA-AGUGGg -5'
22890 3' -55.7 NC_005137.2 + 96065 0.68 0.779938
Target:  5'- cGAACGCuACCGCGUuauGCUGU--AUCCg -3'
miRNA:   3'- -UUUGCGuUGGCGCGu--CGGCAagUGGG- -5'
22890 3' -55.7 NC_005137.2 + 130990 0.68 0.779938
Target:  5'- -uGCGCcugaCGCGCcGCUGUUCACUg -3'
miRNA:   3'- uuUGCGuug-GCGCGuCGGCAAGUGGg -5'
22890 3' -55.7 NC_005137.2 + 55017 0.68 0.789303
Target:  5'- uGGugGCAAuggcCCGUGC-GCCGUgCACCa -3'
miRNA:   3'- -UUugCGUU----GGCGCGuCGGCAaGUGGg -5'
22890 3' -55.7 NC_005137.2 + 96413 0.68 0.789303
Target:  5'- --cCGCuacCCGCGCGGCgacgCGCCCg -3'
miRNA:   3'- uuuGCGuu-GGCGCGUCGgcaaGUGGG- -5'
22890 3' -55.7 NC_005137.2 + 73596 0.68 0.798521
Target:  5'- --uUGCAGCCgGCGCaacgaAGUCGUUUGCCa -3'
miRNA:   3'- uuuGCGUUGG-CGCG-----UCGGCAAGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.