miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22891 3' -61 NC_005137.2 + 84570 0.66 0.7341
Target:  5'- gUCGGCgCGUUCGGGCGgGUCGggcACGUGc -3'
miRNA:   3'- -GGCUGgGCGGGCUUGCgCGGC---UGCAC- -5'
22891 3' -61 NC_005137.2 + 108559 0.66 0.7341
Target:  5'- gCCGACggagcgcacgUUGCCCaAAU-CGCCGACGUGa -3'
miRNA:   3'- -GGCUG----------GGCGGGcUUGcGCGGCUGCAC- -5'
22891 3' -61 NC_005137.2 + 100143 0.66 0.7341
Target:  5'- aCaGCUCGCCCacguacGGGCGCGCCGGguCGUc -3'
miRNA:   3'- gGcUGGGCGGG------CUUGCGCGGCU--GCAc -5'
22891 3' -61 NC_005137.2 + 56661 0.66 0.7341
Target:  5'- gCGACCuCGUgcuugCCGAcgGCGCuGUgGACGUGa -3'
miRNA:   3'- gGCUGG-GCG-----GGCU--UGCG-CGgCUGCAC- -5'
22891 3' -61 NC_005137.2 + 11267 0.66 0.705673
Target:  5'- gCGGCgcugaCGUCCGcuACGCGCUGACGc- -3'
miRNA:   3'- gGCUGg----GCGGGCu-UGCGCGGCUGCac -5'
22891 3' -61 NC_005137.2 + 69487 0.66 0.705673
Target:  5'- aCGACCCGUauUCGcuaAACGCGuuGACa-- -3'
miRNA:   3'- gGCUGGGCG--GGC---UUGCGCggCUGcac -5'
22891 3' -61 NC_005137.2 + 95589 0.66 0.696073
Target:  5'- gCCGuuuugCCGCCCGcGCacuGUGCgCGACGUGc -3'
miRNA:   3'- -GGCug---GGCGGGCuUG---CGCG-GCUGCAC- -5'
22891 3' -61 NC_005137.2 + 20258 0.67 0.676735
Target:  5'- aCCGugCCGUacaCCGAuCGC-CCGGCGc- -3'
miRNA:   3'- -GGCugGGCG---GGCUuGCGcGGCUGCac -5'
22891 3' -61 NC_005137.2 + 124025 0.67 0.676735
Target:  5'- aCCG-CUCGUCCGugUGCGCCagcauCGUGg -3'
miRNA:   3'- -GGCuGGGCGGGCuuGCGCGGcu---GCAC- -5'
22891 3' -61 NC_005137.2 + 35354 0.67 0.675764
Target:  5'- gCCGACCCGaCCaacaacaCGcAgGCGCCGcUGUGg -3'
miRNA:   3'- -GGCUGGGC-GG-------GCuUgCGCGGCuGCAC- -5'
22891 3' -61 NC_005137.2 + 71727 0.67 0.664089
Target:  5'- aCGACCUGCCCagccauaaagcuaaGAGCGUGCgGAaaaaGUu -3'
miRNA:   3'- gGCUGGGCGGG--------------CUUGCGCGgCUg---CAc -5'
22891 3' -61 NC_005137.2 + 95481 0.67 0.657263
Target:  5'- aCCGgucggaugcGCgCCGCaCGGGCGCaucGCUGACGUGg -3'
miRNA:   3'- -GGC---------UG-GGCGgGCUUGCG---CGGCUGCAC- -5'
22891 3' -61 NC_005137.2 + 100209 0.67 0.657263
Target:  5'- aCGugUUGCUgGuGCGCGUCGACGa- -3'
miRNA:   3'- gGCugGGCGGgCuUGCGCGGCUGCac -5'
22891 3' -61 NC_005137.2 + 130870 0.67 0.646518
Target:  5'- cCCGcGCCugaauuguaCGCCgCGGACGCGCCGcaguuuuACGUa -3'
miRNA:   3'- -GGC-UGG---------GCGG-GCUUGCGCGGC-------UGCAc -5'
22891 3' -61 NC_005137.2 + 29507 0.67 0.63576
Target:  5'- uCCGACCCGUUCuauuauaugcacGACGCGauaaaaCGGCGUGu -3'
miRNA:   3'- -GGCUGGGCGGGc-----------UUGCGCg-----GCUGCAC- -5'
22891 3' -61 NC_005137.2 + 8941 0.67 0.627934
Target:  5'- cCCGGCcgCCGaCCCGGACaCGCCGcaauuUGUGg -3'
miRNA:   3'- -GGCUG--GGC-GGGCUUGcGCGGCu----GCAC- -5'
22891 3' -61 NC_005137.2 + 56143 0.67 0.627934
Target:  5'- -aGACCCGUCCGAcGCaGCGaCCGcACGa- -3'
miRNA:   3'- ggCUGGGCGGGCU-UG-CGC-GGC-UGCac -5'
22891 3' -61 NC_005137.2 + 31680 0.68 0.618155
Target:  5'- aCGACaCCGCCgcgugguugugCGGuCGCaCCGACGUGu -3'
miRNA:   3'- gGCUG-GGCGG-----------GCUuGCGcGGCUGCAC- -5'
22891 3' -61 NC_005137.2 + 35693 0.68 0.608385
Target:  5'- cCCGAUUCGCUaaacaacguaaaCGGGCGCGuuGuCGUGc -3'
miRNA:   3'- -GGCUGGGCGG------------GCUUGCGCggCuGCAC- -5'
22891 3' -61 NC_005137.2 + 129356 0.68 0.608385
Target:  5'- aCCGACCgaGCCCaAACGUGCCGuuuuGCa-- -3'
miRNA:   3'- -GGCUGGg-CGGGcUUGCGCGGC----UGcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.