miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22893 3' -59.8 NC_005137.2 + 42241 0.66 0.748938
Target:  5'- -gCGCGAgCACGCGUUGCCUcucaacuacaACGaGCu -3'
miRNA:   3'- agGCGUUgGUGCGCAGCGGG----------UGCcUG- -5'
22893 3' -59.8 NC_005137.2 + 10724 0.66 0.739435
Target:  5'- aCCGCAucGCgCACGCGUCGgCCAg---- -3'
miRNA:   3'- aGGCGU--UG-GUGCGCAGCgGGUgccug -5'
22893 3' -59.8 NC_005137.2 + 52069 0.66 0.729842
Target:  5'- -aCGCGAa-ACGCGUUGUCgCACGGuACa -3'
miRNA:   3'- agGCGUUggUGCGCAGCGG-GUGCC-UG- -5'
22893 3' -59.8 NC_005137.2 + 48235 0.66 0.720168
Target:  5'- uUCCGUugcuGCCGCcguuacCGUCGCCCACa--- -3'
miRNA:   3'- -AGGCGu---UGGUGc-----GCAGCGGGUGccug -5'
22893 3' -59.8 NC_005137.2 + 100257 0.66 0.720168
Target:  5'- gCCGCAACgCACGgGcgCGCgUCGCGG-Ca -3'
miRNA:   3'- aGGCGUUG-GUGCgCa-GCG-GGUGCCuG- -5'
22893 3' -59.8 NC_005137.2 + 53277 0.66 0.720168
Target:  5'- aCUGCAugCAgGUGUuuaaCGCCCACGa-- -3'
miRNA:   3'- aGGCGUugGUgCGCA----GCGGGUGCcug -5'
22893 3' -59.8 NC_005137.2 + 63280 0.66 0.710421
Target:  5'- cUCCaacaCggUCuCGcCGUCGCUCGCGGGCa -3'
miRNA:   3'- -AGGc---GuuGGuGC-GCAGCGGGUGCCUG- -5'
22893 3' -59.8 NC_005137.2 + 12443 0.66 0.710421
Target:  5'- gUCCGUGAUCAgGCGcuuucaUGUCCACGGuCg -3'
miRNA:   3'- -AGGCGUUGGUgCGCa-----GCGGGUGCCuG- -5'
22893 3' -59.8 NC_005137.2 + 30977 0.67 0.690745
Target:  5'- gCCGCGucggACCGCGUGcuugCGCaCCGCuGGAg -3'
miRNA:   3'- aGGCGU----UGGUGCGCa---GCG-GGUG-CCUg -5'
22893 3' -59.8 NC_005137.2 + 110454 0.67 0.680833
Target:  5'- aCCGCGGCCgGCGCGUa---CACGGGg -3'
miRNA:   3'- aGGCGUUGG-UGCGCAgcggGUGCCUg -5'
22893 3' -59.8 NC_005137.2 + 18257 0.67 0.680833
Target:  5'- aCUGCGGCgC-CGCGUcCGUuaaCACGGACa -3'
miRNA:   3'- aGGCGUUG-GuGCGCA-GCGg--GUGCCUG- -5'
22893 3' -59.8 NC_005137.2 + 38085 0.67 0.680833
Target:  5'- aCUGaCcGCCACGgacaaGCCCACGGGCa -3'
miRNA:   3'- aGGC-GuUGGUGCgcag-CGGGUGCCUG- -5'
22893 3' -59.8 NC_005137.2 + 98118 0.67 0.680833
Target:  5'- aCCGCcGCCGgcuacCGCGUCGUCguacgcgcgUugGGACu -3'
miRNA:   3'- aGGCGuUGGU-----GCGCAGCGG---------GugCCUG- -5'
22893 3' -59.8 NC_005137.2 + 110808 0.67 0.670882
Target:  5'- uUUCGCAAUCgACGC--CGCCCGCcGACg -3'
miRNA:   3'- -AGGCGUUGG-UGCGcaGCGGGUGcCUG- -5'
22893 3' -59.8 NC_005137.2 + 130864 0.67 0.670882
Target:  5'- -gCGCAGCC-CGCGccugaaUUGUacgCCGCGGACg -3'
miRNA:   3'- agGCGUUGGuGCGC------AGCG---GGUGCCUG- -5'
22893 3' -59.8 NC_005137.2 + 39818 0.67 0.670882
Target:  5'- -gUGCAACCAaaCGcCGCgCCACGGAa -3'
miRNA:   3'- agGCGUUGGUgcGCaGCG-GGUGCCUg -5'
22893 3' -59.8 NC_005137.2 + 35167 0.67 0.660901
Target:  5'- --gGCAACaauC-CGUCGCCCGCuGGGCa -3'
miRNA:   3'- aggCGUUGgu-GcGCAGCGGGUG-CCUG- -5'
22893 3' -59.8 NC_005137.2 + 88794 0.67 0.660901
Target:  5'- gCCGUuGCCacucguuguagcGCGCGUCGCgUcccugucgGCGGACg -3'
miRNA:   3'- aGGCGuUGG------------UGCGCAGCGgG--------UGCCUG- -5'
22893 3' -59.8 NC_005137.2 + 102960 0.67 0.660901
Target:  5'- aUCC-CAG-CGCGCGUCGCgCCACGuuCg -3'
miRNA:   3'- -AGGcGUUgGUGCGCAGCG-GGUGCcuG- -5'
22893 3' -59.8 NC_005137.2 + 96412 0.67 0.640881
Target:  5'- aCCGCuacCCGCGCGgcgacgCGCCCGCc--- -3'
miRNA:   3'- aGGCGuu-GGUGCGCa-----GCGGGUGccug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.