miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22893 3' -59.8 NC_005137.2 + 130864 0.67 0.670882
Target:  5'- -gCGCAGCC-CGCGccugaaUUGUacgCCGCGGACg -3'
miRNA:   3'- agGCGUUGGuGCGC------AGCG---GGUGCCUG- -5'
22893 3' -59.8 NC_005137.2 + 130382 0.68 0.580892
Target:  5'- -gCGCAACC-CGUGgaacCGCCUuCGGACc -3'
miRNA:   3'- agGCGUUGGuGCGCa---GCGGGuGCCUG- -5'
22893 3' -59.8 NC_005137.2 + 122499 0.69 0.519266
Target:  5'- aCUGCGucGCCGCGCGUCuuuuucacgugcaaGCCUgcauCGGGCa -3'
miRNA:   3'- aGGCGU--UGGUGCGCAG--------------CGGGu---GCCUG- -5'
22893 3' -59.8 NC_005137.2 + 119716 0.69 0.531798
Target:  5'- -aCGCAucccGCCGCGCaG-CGCCCAUGG-Ca -3'
miRNA:   3'- agGCGU----UGGUGCG-CaGCGGGUGCCuG- -5'
22893 3' -59.8 NC_005137.2 + 110808 0.67 0.670882
Target:  5'- uUUCGCAAUCgACGC--CGCCCGCcGACg -3'
miRNA:   3'- -AGGCGUUGG-UGCGcaGCGGGUGcCUG- -5'
22893 3' -59.8 NC_005137.2 + 110454 0.67 0.680833
Target:  5'- aCCGCGGCCgGCGCGUa---CACGGGg -3'
miRNA:   3'- aGGCGUUGG-UGCGCAgcggGUGCCUg -5'
22893 3' -59.8 NC_005137.2 + 109780 0.7 0.493629
Target:  5'- --aGCGGcCCGCaGCGUCGCCCACGu-- -3'
miRNA:   3'- aggCGUU-GGUG-CGCAGCGGGUGCcug -5'
22893 3' -59.8 NC_005137.2 + 109426 0.69 0.531798
Target:  5'- aCCGCGGCCuAUGCG-CgGCCCAuCGGuCa -3'
miRNA:   3'- aGGCGUUGG-UGCGCaG-CGGGU-GCCuG- -5'
22893 3' -59.8 NC_005137.2 + 106201 0.7 0.475018
Target:  5'- aUCCGCAcgugggaCGCG-GUCGCCaagaACGGGCa -3'
miRNA:   3'- -AGGCGUug-----GUGCgCAGCGGg---UGCCUG- -5'
22893 3' -59.8 NC_005137.2 + 102960 0.67 0.660901
Target:  5'- aUCC-CAG-CGCGCGUCGCgCCACGuuCg -3'
miRNA:   3'- -AGGcGUUgGUGCGCAGCG-GGUGCcuG- -5'
22893 3' -59.8 NC_005137.2 + 100257 0.66 0.720168
Target:  5'- gCCGCAACgCACGgGcgCGCgUCGCGG-Ca -3'
miRNA:   3'- aGGCGUUG-GUGCgCa-GCG-GGUGCCuG- -5'
22893 3' -59.8 NC_005137.2 + 99964 0.69 0.541511
Target:  5'- gCCGCGGCCGCGCGccucuucgugCGCCagcaGCGcACg -3'
miRNA:   3'- aGGCGUUGGUGCGCa---------GCGGg---UGCcUG- -5'
22893 3' -59.8 NC_005137.2 + 99326 0.68 0.590841
Target:  5'- aCCGCAcaACCACGCGgcggugUCGUCCGCu--- -3'
miRNA:   3'- aGGCGU--UGGUGCGC------AGCGGGUGccug -5'
22893 3' -59.8 NC_005137.2 + 98118 0.67 0.680833
Target:  5'- aCCGCcGCCGgcuacCGCGUCGUCguacgcgcgUugGGACu -3'
miRNA:   3'- aGGCGuUGGU-----GCGCAGCGG---------GugCCUG- -5'
22893 3' -59.8 NC_005137.2 + 96482 0.77 0.190083
Target:  5'- -aCGCAACacgguGCGCGUCGUguCCACGGGCg -3'
miRNA:   3'- agGCGUUGg----UGCGCAGCG--GGUGCCUG- -5'
22893 3' -59.8 NC_005137.2 + 96412 0.67 0.640881
Target:  5'- aCCGCuacCCGCGCGgcgacgCGCCCGCc--- -3'
miRNA:   3'- aGGCGuu-GGUGCGCa-----GCGGGUGccug -5'
22893 3' -59.8 NC_005137.2 + 95642 0.77 0.18548
Target:  5'- uUCCGCGugCGC-CGUgCGCCgACGGGCa -3'
miRNA:   3'- -AGGCGUugGUGcGCA-GCGGgUGCCUG- -5'
22893 3' -59.8 NC_005137.2 + 88794 0.67 0.660901
Target:  5'- gCCGUuGCCacucguuguagcGCGCGUCGCgUcccugucgGCGGACg -3'
miRNA:   3'- aGGCGuUGG------------UGCGCAGCGgG--------UGCCUG- -5'
22893 3' -59.8 NC_005137.2 + 74733 0.71 0.412854
Target:  5'- cUUCGCAGuCCAuggccguuuugUGCGUaaaCGCCCACGGAUc -3'
miRNA:   3'- -AGGCGUU-GGU-----------GCGCA---GCGGGUGCCUG- -5'
22893 3' -59.8 NC_005137.2 + 67326 0.71 0.456764
Target:  5'- cCCGuCAACacaaACGCGUCGgguucggugaCCGCGGGCg -3'
miRNA:   3'- aGGC-GUUGg---UGCGCAGCg---------GGUGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.