Results 1 - 20 of 42 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22896 | 3' | -58.5 | NC_005137.2 | + | 123990 | 0.68 | 0.676084 |
Target: 5'- -gGCCGUGACGCGCgugcgccacguUGUGCCCGg--- -3' miRNA: 3'- agUGGCGCUGCGUG-----------GUACGGGCacag -5' |
|||||||
22896 | 3' | -58.5 | NC_005137.2 | + | 122278 | 0.67 | 0.695166 |
Target: 5'- -aACCGCGuACGUaauagcuGCC--GCCCGUGUUg -3' miRNA: 3'- agUGGCGC-UGCG-------UGGuaCGGGCACAG- -5' |
|||||||
22896 | 3' | -58.5 | NC_005137.2 | + | 119316 | 0.69 | 0.588932 |
Target: 5'- aUCACCGCGAucagacacauggaaaCGCcgaaaaugcuGCCAgGCCCGauUGUCu -3' miRNA: 3'- -AGUGGCGCU---------------GCG----------UGGUaCGGGC--ACAG- -5' |
|||||||
22896 | 3' | -58.5 | NC_005137.2 | + | 112020 | 0.67 | 0.745291 |
Target: 5'- gUACCGUGACGCGCU--GCgaCGUGcUCa -3' miRNA: 3'- aGUGGCGCUGCGUGGuaCGg-GCAC-AG- -5' |
|||||||
22896 | 3' | -58.5 | NC_005137.2 | + | 110644 | 0.69 | 0.574839 |
Target: 5'- gCGCCGaCGGCGUuugGCuUGUGCCCGUGa- -3' miRNA: 3'- aGUGGC-GCUGCG---UG-GUACGGGCACag -5' |
|||||||
22896 | 3' | -58.5 | NC_005137.2 | + | 110597 | 0.67 | 0.745291 |
Target: 5'- cCugUGCGACG-ACCAguuggUGUCCGUGg- -3' miRNA: 3'- aGugGCGCUGCgUGGU-----ACGGGCACag -5' |
|||||||
22896 | 3' | -58.5 | NC_005137.2 | + | 108646 | 0.7 | 0.56482 |
Target: 5'- cUCGCCuGcCGACguGCACCcauUGCuuGUGUCg -3' miRNA: 3'- -AGUGG-C-GCUG--CGUGGu--ACGggCACAG- -5' |
|||||||
22896 | 3' | -58.5 | NC_005137.2 | + | 107921 | 0.67 | 0.744328 |
Target: 5'- cUUACCGCGgaacaACGCGCCGUGUaCGccaaguacaaauuUGUCa -3' miRNA: 3'- -AGUGGCGC-----UGCGUGGUACGgGC-------------ACAG- -5' |
|||||||
22896 | 3' | -58.5 | NC_005137.2 | + | 104367 | 0.67 | 0.72587 |
Target: 5'- gCGCUGCGACGCGCac-GCuuGUacgagcGUCa -3' miRNA: 3'- aGUGGCGCUGCGUGguaCGggCA------CAG- -5' |
|||||||
22896 | 3' | -58.5 | NC_005137.2 | + | 97902 | 0.69 | 0.605112 |
Target: 5'- cCACUGCGACaccaGCACCAccuUGUCguugggCGUGUCa -3' miRNA: 3'- aGUGGCGCUG----CGUGGU---ACGG------GCACAG- -5' |
|||||||
22896 | 3' | -58.5 | NC_005137.2 | + | 97801 | 0.71 | 0.468076 |
Target: 5'- cUCGCCGCggugcgcucuucGACGCGCaauUGaCCCGUGUa -3' miRNA: 3'- -AGUGGCG------------CUGCGUGgu-AC-GGGCACAg -5' |
|||||||
22896 | 3' | -58.5 | NC_005137.2 | + | 96474 | 0.66 | 0.791975 |
Target: 5'- -gACCGCGaACGCaacACgGUGCgcgUCGUGUCc -3' miRNA: 3'- agUGGCGC-UGCG---UGgUACG---GGCACAG- -5' |
|||||||
22896 | 3' | -58.5 | NC_005137.2 | + | 96422 | 0.66 | 0.76432 |
Target: 5'- gCGCgGCGACGCGCCc-GCCgCGUugcGUUu -3' miRNA: 3'- aGUGgCGCUGCGUGGuaCGG-GCA---CAG- -5' |
|||||||
22896 | 3' | -58.5 | NC_005137.2 | + | 95905 | 0.67 | 0.696166 |
Target: 5'- -gACCGCGuuUGCGCCAaacaGCCgCGUGUa -3' miRNA: 3'- agUGGCGCu-GCGUGGUa---CGG-GCACAg -5' |
|||||||
22896 | 3' | -58.5 | NC_005137.2 | + | 95185 | 0.66 | 0.754859 |
Target: 5'- aCGCCGUGcacuACGCACgCAgauUGCaacgCGUGUCg -3' miRNA: 3'- aGUGGCGC----UGCGUG-GU---ACGg---GCACAG- -5' |
|||||||
22896 | 3' | -58.5 | NC_005137.2 | + | 93903 | 0.67 | 0.735625 |
Target: 5'- -aGgCGCGuAUGcCGCCAUGUuugCCGUGUCa -3' miRNA: 3'- agUgGCGC-UGC-GUGGUACG---GGCACAG- -5' |
|||||||
22896 | 3' | -58.5 | NC_005137.2 | + | 92353 | 0.68 | 0.676084 |
Target: 5'- -uGCCGCaacGCGCGCC-UGCCCaGcGUCg -3' miRNA: 3'- agUGGCGc--UGCGUGGuACGGG-CaCAG- -5' |
|||||||
22896 | 3' | -58.5 | NC_005137.2 | + | 88508 | 0.67 | 0.706132 |
Target: 5'- gUCGCCGCGcagcaaGCGCCGUGUgCGUu-- -3' miRNA: 3'- -AGUGGCGCug----CGUGGUACGgGCAcag -5' |
|||||||
22896 | 3' | -58.5 | NC_005137.2 | + | 86100 | 0.66 | 0.773666 |
Target: 5'- aCGCCGCGACGagaaaaGCCgCGUGUUu -3' miRNA: 3'- aGUGGCGCUGCgugguaCGG-GCACAG- -5' |
|||||||
22896 | 3' | -58.5 | NC_005137.2 | + | 78231 | 0.66 | 0.791073 |
Target: 5'- gUACauUGACGCgcaugauagcaaaACCGauUGCCCGUGUCu -3' miRNA: 3'- aGUGgcGCUGCG-------------UGGU--ACGGGCACAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home