miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22896 5' -52 NC_005137.2 + 35158 1.12 0.003933
Target:  5'- uUAAACACGGGCAACAAUCCGUCGCCCg -3'
miRNA:   3'- -AUUUGUGCCCGUUGUUAGGCAGCGGG- -5'
22896 5' -52 NC_005137.2 + 65412 0.83 0.26626
Target:  5'- cAAACACGGaGCGGCAcccaaugCCGUUGCCCg -3'
miRNA:   3'- aUUUGUGCC-CGUUGUua-----GGCAGCGGG- -5'
22896 5' -52 NC_005137.2 + 87193 0.81 0.338568
Target:  5'- cGGGCGCGGGCGGCugcucgugCCGUCGCUg -3'
miRNA:   3'- aUUUGUGCCCGUUGuua-----GGCAGCGGg -5'
22896 5' -52 NC_005137.2 + 67286 0.78 0.442726
Target:  5'- aAAAUgcuGCGGGCAacGCAAUUugaCGUCGCCCg -3'
miRNA:   3'- aUUUG---UGCCCGU--UGUUAG---GCAGCGGG- -5'
22896 5' -52 NC_005137.2 + 63706 0.77 0.511199
Target:  5'- -cGAUGCGGGCGACGucaaauUgCGUUGCCCg -3'
miRNA:   3'- auUUGUGCCCGUUGUu-----AgGCAGCGGG- -5'
22896 5' -52 NC_005137.2 + 101353 0.76 0.541883
Target:  5'- cGAGUACGGGCAcuucaugugACGGUCCGUCcguuuuGCCCa -3'
miRNA:   3'- aUUUGUGCCCGU---------UGUUAGGCAG------CGGG- -5'
22896 5' -52 NC_005137.2 + 112700 0.76 0.541883
Target:  5'- uUAAACGCGGGC-ACGucGUCCa-CGCCCa -3'
miRNA:   3'- -AUUUGUGCCCGuUGU--UAGGcaGCGGG- -5'
22896 5' -52 NC_005137.2 + 95843 0.75 0.594239
Target:  5'- ----aGCGGGCGACGGaUUGUUGCCCg -3'
miRNA:   3'- auuugUGCCCGUUGUUaGGCAGCGGG- -5'
22896 5' -52 NC_005137.2 + 50157 0.75 0.615444
Target:  5'- uUAAACGUGGGCAGCAcaaacgucgaGUCCGugUCGCCg -3'
miRNA:   3'- -AUUUGUGCCCGUUGU----------UAGGC--AGCGGg -5'
22896 5' -52 NC_005137.2 + 52486 0.75 0.62607
Target:  5'- gUGAACAUGGGCuucAACAA-CCGcCGCCUc -3'
miRNA:   3'- -AUUUGUGCCCG---UUGUUaGGCaGCGGG- -5'
22896 5' -52 NC_005137.2 + 38821 0.75 0.647329
Target:  5'- uUGAGCACGGGCAacGCGAUCUcaauguuguuGUUGCUg -3'
miRNA:   3'- -AUUUGUGCCCGU--UGUUAGG----------CAGCGGg -5'
22896 5' -52 NC_005137.2 + 31049 0.74 0.668536
Target:  5'- gAGGCGCGcGGCcGCGG-CCGUUGUCCa -3'
miRNA:   3'- aUUUGUGC-CCGuUGUUaGGCAGCGGG- -5'
22896 5' -52 NC_005137.2 + 67353 0.74 0.668536
Target:  5'- gUGAcCGCGGGCGcgacgcgaugcGCGA-CCGUCGCCg -3'
miRNA:   3'- -AUUuGUGCCCGU-----------UGUUaGGCAGCGGg -5'
22896 5' -52 NC_005137.2 + 122423 0.74 0.679097
Target:  5'- aAGACGCGGGUuuugcuGCAGcgcgcggucuacUCCGUCGgCCg -3'
miRNA:   3'- aUUUGUGCCCGu-----UGUU------------AGGCAGCgGG- -5'
22896 5' -52 NC_005137.2 + 75586 0.74 0.700083
Target:  5'- cGGACGCGGGCGGCg--CCGUgCGCg- -3'
miRNA:   3'- aUUUGUGCCCGUUGuuaGGCA-GCGgg -5'
22896 5' -52 NC_005137.2 + 95885 0.74 0.704253
Target:  5'- -cGACACGGGCAugGugcgucgcggugaccGUaCCGUUGCCa -3'
miRNA:   3'- auUUGUGCCCGUugU---------------UA-GGCAGCGGg -5'
22896 5' -52 NC_005137.2 + 108545 0.73 0.720823
Target:  5'- gUGAGCGCGGuGCAGCcgacgGAgcgCaCGUUGCCCa -3'
miRNA:   3'- -AUUUGUGCC-CGUUG-----UUa--G-GCAGCGGG- -5'
22896 5' -52 NC_005137.2 + 7832 0.73 0.755282
Target:  5'- --uGC-CGGGCGGCAAacaggcaaaauaaucUUCGUCGUCCa -3'
miRNA:   3'- auuUGuGCCCGUUGUU---------------AGGCAGCGGG- -5'
22896 5' -52 NC_005137.2 + 87426 0.72 0.761234
Target:  5'- -uGACuuGGGCAACGAccaguacgcaUUCGUgCGCCCg -3'
miRNA:   3'- auUUGugCCCGUUGUU----------AGGCA-GCGGG- -5'
22896 5' -52 NC_005137.2 + 8363 0.72 0.78074
Target:  5'- gUGAGCGCGGGCGACAucaaCCGcaucaCGCgCa -3'
miRNA:   3'- -AUUUGUGCCCGUUGUua--GGCa----GCGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.