miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22896 5' -52 NC_005137.2 + 65583 0.67 0.959929
Target:  5'- --uACACGGGCAACGgcAUUgGgugcCGCuCCg -3'
miRNA:   3'- auuUGUGCCCGUUGU--UAGgCa---GCG-GG- -5'
22896 5' -52 NC_005137.2 + 31186 0.69 0.910151
Target:  5'- --uAUACGGcGCAACcggCCcgcGUCGCCCu -3'
miRNA:   3'- auuUGUGCC-CGUUGuuaGG---CAGCGGG- -5'
22896 5' -52 NC_005137.2 + 43173 0.69 0.91628
Target:  5'- aAAACuuGGGCAAauuguUCCGUuuguccCGCCCu -3'
miRNA:   3'- aUUUGugCCCGUUguu--AGGCA------GCGGG- -5'
22896 5' -52 NC_005137.2 + 6872 0.68 0.927768
Target:  5'- --cGCugGGGCAcaGCAGUuuGUUGUUUg -3'
miRNA:   3'- auuUGugCCCGU--UGUUAggCAGCGGG- -5'
22896 5' -52 NC_005137.2 + 96025 0.68 0.927768
Target:  5'- cGGACAUGGuGUuuCAAgccaCCGcCGCCCa -3'
miRNA:   3'- aUUUGUGCC-CGuuGUUa---GGCaGCGGG- -5'
22896 5' -52 NC_005137.2 + 43814 0.68 0.933124
Target:  5'- -cGGCACGaGCAGCcgcCCG-CGCCCg -3'
miRNA:   3'- auUUGUGCcCGUUGuuaGGCaGCGGG- -5'
22896 5' -52 NC_005137.2 + 123045 0.68 0.938224
Target:  5'- gGAACACGGGCcgcCGGUCgagGUCGCg- -3'
miRNA:   3'- aUUUGUGCCCGuu-GUUAGg--CAGCGgg -5'
22896 5' -52 NC_005137.2 + 22430 0.67 0.950718
Target:  5'- gGAGCGucacgucggcgauuUGGGCAACGugcgcUCCGUCGgCUg -3'
miRNA:   3'- aUUUGU--------------GCCCGUUGUu----AGGCAGCgGG- -5'
22896 5' -52 NC_005137.2 + 12057 0.67 0.951993
Target:  5'- -uGAUACGccagucGGuCGGCAAUCaCGUCGCCg -3'
miRNA:   3'- auUUGUGC------CC-GUUGUUAG-GCAGCGGg -5'
22896 5' -52 NC_005137.2 + 76499 0.7 0.885996
Target:  5'- -uGACACGGGCGucuauucaacggcguGCAcuUCCGUCGgCa -3'
miRNA:   3'- auUUGUGCCCGU---------------UGUu-AGGCAGCgGg -5'
22896 5' -52 NC_005137.2 + 44902 0.7 0.883115
Target:  5'- aUAAACACGGGCuuu--UCuCGUCGCg- -3'
miRNA:   3'- -AUUUGUGCCCGuuguuAG-GCAGCGgg -5'
22896 5' -52 NC_005137.2 + 70595 0.72 0.790282
Target:  5'- --uGCGCGGGCGGCuuUuuGUUGCgCu -3'
miRNA:   3'- auuUGUGCCCGUUGuuAggCAGCGgG- -5'
22896 5' -52 NC_005137.2 + 112700 0.76 0.541883
Target:  5'- uUAAACGCGGGC-ACGucGUCCa-CGCCCa -3'
miRNA:   3'- -AUUUGUGCCCGuUGU--UAGGcaGCGGG- -5'
22896 5' -52 NC_005137.2 + 95843 0.75 0.594239
Target:  5'- ----aGCGGGCGACGGaUUGUUGCCCg -3'
miRNA:   3'- auuugUGCCCGUUGUUaGGCAGCGGG- -5'
22896 5' -52 NC_005137.2 + 50157 0.75 0.615444
Target:  5'- uUAAACGUGGGCAGCAcaaacgucgaGUCCGugUCGCCg -3'
miRNA:   3'- -AUUUGUGCCCGUUGU----------UAGGC--AGCGGg -5'
22896 5' -52 NC_005137.2 + 52486 0.75 0.62607
Target:  5'- gUGAACAUGGGCuucAACAA-CCGcCGCCUc -3'
miRNA:   3'- -AUUUGUGCCCG---UUGUUaGGCaGCGGG- -5'
22896 5' -52 NC_005137.2 + 38821 0.75 0.647329
Target:  5'- uUGAGCACGGGCAacGCGAUCUcaauguuguuGUUGCUg -3'
miRNA:   3'- -AUUUGUGCCCGU--UGUUAGG----------CAGCGGg -5'
22896 5' -52 NC_005137.2 + 122423 0.74 0.679097
Target:  5'- aAGACGCGGGUuuugcuGCAGcgcgcggucuacUCCGUCGgCCg -3'
miRNA:   3'- aUUUGUGCCCGu-----UGUU------------AGGCAGCgGG- -5'
22896 5' -52 NC_005137.2 + 95885 0.74 0.704253
Target:  5'- -cGACACGGGCAugGugcgucgcggugaccGUaCCGUUGCCa -3'
miRNA:   3'- auUUGUGCCCGUugU---------------UA-GGCAGCGGg -5'
22896 5' -52 NC_005137.2 + 87426 0.72 0.761234
Target:  5'- -uGACuuGGGCAACGAccaguacgcaUUCGUgCGCCCg -3'
miRNA:   3'- auUUGugCCCGUUGUU----------AGGCA-GCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.