miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22896 5' -52 NC_005137.2 + 6781 0.67 0.963536
Target:  5'- --uGCGUGGGUucgucaAGUCCGUUGCCUg -3'
miRNA:   3'- auuUGUGCCCGuug---UUAGGCAGCGGG- -5'
22896 5' -52 NC_005137.2 + 6872 0.68 0.927768
Target:  5'- --cGCugGGGCAcaGCAGUuuGUUGUUUg -3'
miRNA:   3'- auuUGugCCCGU--UGUUAggCAGCGGG- -5'
22896 5' -52 NC_005137.2 + 7832 0.73 0.755282
Target:  5'- --uGC-CGGGCGGCAAacaggcaaaauaaucUUCGUCGUCCa -3'
miRNA:   3'- auuUGuGCCCGUUGUU---------------AGGCAGCGGG- -5'
22896 5' -52 NC_005137.2 + 8363 0.72 0.78074
Target:  5'- gUGAGCGCGGGCGACAucaaCCGcaucaCGCgCa -3'
miRNA:   3'- -AUUUGUGCCCGUUGUua--GGCa----GCGgG- -5'
22896 5' -52 NC_005137.2 + 8722 0.7 0.885996
Target:  5'- -cAACACGGGCGGCAgcuauuacguacgcgGUUCGUCGg-- -3'
miRNA:   3'- auUUGUGCCCGUUGU---------------UAGGCAGCggg -5'
22896 5' -52 NC_005137.2 + 11206 0.67 0.96691
Target:  5'- ----aAUGGGCGccGCuccggCCGUCGCCg -3'
miRNA:   3'- auuugUGCCCGU--UGuua--GGCAGCGGg -5'
22896 5' -52 NC_005137.2 + 12057 0.67 0.951993
Target:  5'- -uGAUACGccagucGGuCGGCAAUCaCGUCGCCg -3'
miRNA:   3'- auUUGUGC------CC-GUUGUUAG-GCAGCGGg -5'
22896 5' -52 NC_005137.2 + 14102 0.68 0.938224
Target:  5'- cAAGCgaaACGGGUGACGG-CCGUUGUCa -3'
miRNA:   3'- aUUUG---UGCCCGUUGUUaGGCAGCGGg -5'
22896 5' -52 NC_005137.2 + 22430 0.67 0.950718
Target:  5'- gGAGCGucacgucggcgauuUGGGCAACGugcgcUCCGUCGgCUg -3'
miRNA:   3'- aUUUGU--------------GCCCGUUGUu----AGGCAGCgGG- -5'
22896 5' -52 NC_005137.2 + 22640 0.68 0.927768
Target:  5'- ----gACGGGUAcccACGAaCCGUCGgCCa -3'
miRNA:   3'- auuugUGCCCGU---UGUUaGGCAGCgGG- -5'
22896 5' -52 NC_005137.2 + 22843 0.7 0.858711
Target:  5'- cGAGgGCGGGCGcgcGCAuaccgacgccgCCGcCGCCCg -3'
miRNA:   3'- aUUUgUGCCCGU---UGUua---------GGCaGCGGG- -5'
22896 5' -52 NC_005137.2 + 22979 0.66 0.979157
Target:  5'- cUAGACACGGGCGAUggUUC-UauaacuuuuuuuucaCGCCa -3'
miRNA:   3'- -AUUUGUGCCCGUUGuuAGGcA---------------GCGGg -5'
22896 5' -52 NC_005137.2 + 24321 0.69 0.910151
Target:  5'- gUGGugGCGGGC-ACGG-CCGUUGUCg -3'
miRNA:   3'- -AUUugUGCCCGuUGUUaGGCAGCGGg -5'
22896 5' -52 NC_005137.2 + 31049 0.74 0.668536
Target:  5'- gAGGCGCGcGGCcGCGG-CCGUUGUCCa -3'
miRNA:   3'- aUUUGUGC-CCGuUGUUaGGCAGCGGG- -5'
22896 5' -52 NC_005137.2 + 31186 0.69 0.910151
Target:  5'- --uAUACGGcGCAACcggCCcgcGUCGCCCu -3'
miRNA:   3'- auuUGUGCC-CGUUGuuaGG---CAGCGGG- -5'
22896 5' -52 NC_005137.2 + 33016 0.69 0.903767
Target:  5'- ----gGCGGGCGcaccCAcgCCGcgCGCCCg -3'
miRNA:   3'- auuugUGCCCGUu---GUuaGGCa-GCGGG- -5'
22896 5' -52 NC_005137.2 + 34605 0.7 0.852248
Target:  5'- --cGCGCGGGUAGCGGUCgG-CGCg- -3'
miRNA:   3'- auuUGUGCCCGUUGUUAGgCaGCGgg -5'
22896 5' -52 NC_005137.2 + 35158 1.12 0.003933
Target:  5'- uUAAACACGGGCAACAAUCCGUCGCCCg -3'
miRNA:   3'- -AUUUGUGCCCGUUGUUAGGCAGCGGG- -5'
22896 5' -52 NC_005137.2 + 38821 0.75 0.647329
Target:  5'- uUGAGCACGGGCAacGCGAUCUcaauguuguuGUUGCUg -3'
miRNA:   3'- -AUUUGUGCCCGU--UGUUAGG----------CAGCGGg -5'
22896 5' -52 NC_005137.2 + 41974 0.71 0.826818
Target:  5'- cGAACACGauuacagcGGCAAUAG-CCaGUCGCCUa -3'
miRNA:   3'- aUUUGUGC--------CCGUUGUUaGG-CAGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.