miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22897 3' -59.2 NC_005137.2 + 34709 1.08 0.001648
Target:  5'- gCGCCGGCGUGUCGGCGAAUGCACGCGu -3'
miRNA:   3'- -GCGGCCGCACAGCCGCUUACGUGCGC- -5'
22897 3' -59.2 NC_005137.2 + 70337 0.76 0.23618
Target:  5'- gCGUCGGCGaaggcGUCGGUGAagGUGUugGCGa -3'
miRNA:   3'- -GCGGCCGCa----CAGCCGCU--UACGugCGC- -5'
22897 3' -59.2 NC_005137.2 + 70155 0.74 0.333335
Target:  5'- aGgUGGCgGUGUCGGUGAagGUGUugGCGu -3'
miRNA:   3'- gCgGCCG-CACAGCCGCU--UACGugCGC- -5'
22897 3' -59.2 NC_005137.2 + 103812 0.73 0.371649
Target:  5'- uGCUGGUGUGcggCGGCGGguugGUGCACgGCa -3'
miRNA:   3'- gCGGCCGCACa--GCCGCU----UACGUG-CGc -5'
22897 3' -59.2 NC_005137.2 + 108153 0.73 0.387792
Target:  5'- gCGgCGGCGgcGUCGGU--AUGCGCGCGc -3'
miRNA:   3'- -GCgGCCGCa-CAGCCGcuUACGUGCGC- -5'
22897 3' -59.2 NC_005137.2 + 70413 0.72 0.421428
Target:  5'- uGuuGGCGaaggcGUCGGUGAagGUGUugGCGg -3'
miRNA:   3'- gCggCCGCa----CAGCCGCU--UACGugCGC- -5'
22897 3' -59.2 NC_005137.2 + 84568 0.71 0.456764
Target:  5'- aCGUCGGCGcGUUcgGGCGggUcggGCACGUGc -3'
miRNA:   3'- -GCGGCCGCaCAG--CCGCuuA---CGUGCGC- -5'
22897 3' -59.2 NC_005137.2 + 129257 0.71 0.465844
Target:  5'- uGUgGGCGUGUUGGCGuugucuccGUGCACuGUGu -3'
miRNA:   3'- gCGgCCGCACAGCCGCu-------UACGUG-CGC- -5'
22897 3' -59.2 NC_005137.2 + 75125 0.71 0.475018
Target:  5'- aGUCGGCGUcGUCGGCGcgauuguUGgACGCc -3'
miRNA:   3'- gCGGCCGCA-CAGCCGCuu-----ACgUGCGc -5'
22897 3' -59.2 NC_005137.2 + 70241 0.69 0.568013
Target:  5'- gCGUCGGUGaaggcGUCGGUGAaggcgucgguaaagGUGUugGCGg -3'
miRNA:   3'- -GCGGCCGCa----CAGCCGCU--------------UACGugCGC- -5'
22897 3' -59.2 NC_005137.2 + 70289 0.69 0.568013
Target:  5'- gCGUCGGUGaaggcGUCGGUGAaggcgucgguaaagGUGUugGCGg -3'
miRNA:   3'- -GCGGCCGCa----CAGCCGCU--------------UACGugCGC- -5'
22897 3' -59.2 NC_005137.2 + 123122 0.69 0.580892
Target:  5'- gCGCCGGUGUGcaCGuuuuccuacGUGAcgGCACGCu -3'
miRNA:   3'- -GCGGCCGCACa-GC---------CGCUuaCGUGCGc -5'
22897 3' -59.2 NC_005137.2 + 102255 0.69 0.580892
Target:  5'- uGaCCGGUGUGccaGGCGAcgcGUACGCGa -3'
miRNA:   3'- gC-GGCCGCACag-CCGCUua-CGUGCGC- -5'
22897 3' -59.2 NC_005137.2 + 385 0.69 0.600818
Target:  5'- uGCUGGCuuUGUCGGCGcgcGUGUcCGCGc -3'
miRNA:   3'- gCGGCCGc-ACAGCCGCu--UACGuGCGC- -5'
22897 3' -59.2 NC_005137.2 + 63018 0.69 0.610818
Target:  5'- gCGCCGGCGUGUCGGC-AA-GCu---- -3'
miRNA:   3'- -GCGGCCGCACAGCCGcUUaCGugcgc -5'
22897 3' -59.2 NC_005137.2 + 20564 0.68 0.620833
Target:  5'- gCGCCGGCcg--CGGUG--UGCACGCu -3'
miRNA:   3'- -GCGGCCGcacaGCCGCuuACGUGCGc -5'
22897 3' -59.2 NC_005137.2 + 95575 0.68 0.630856
Target:  5'- aCGgCaGCGUGUUGGCGuuguaguuaauGAUGgGCGCGc -3'
miRNA:   3'- -GCgGcCGCACAGCCGC-----------UUACgUGCGC- -5'
22897 3' -59.2 NC_005137.2 + 129003 0.68 0.630856
Target:  5'- gCGCCGcaGCGUGcaCGaGCu-GUGCACGCGg -3'
miRNA:   3'- -GCGGC--CGCACa-GC-CGcuUACGUGCGC- -5'
22897 3' -59.2 NC_005137.2 + 117580 0.68 0.640881
Target:  5'- cCGCCGGUGcGgcugacgGGCGAcGUGUACGCu -3'
miRNA:   3'- -GCGGCCGCaCag-----CCGCU-UACGUGCGc -5'
22897 3' -59.2 NC_005137.2 + 20195 0.68 0.650898
Target:  5'- gCGUCGGCGgg-CGGCGucgauUGCgaaaGCGCGu -3'
miRNA:   3'- -GCGGCCGCacaGCCGCuu---ACG----UGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.