miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22898 5' -54.8 NC_005137.2 + 34568 1.07 0.003666
Target:  5'- aAAAACCCGCGCAAACGCAACGCGGCGg -3'
miRNA:   3'- -UUUUGGGCGCGUUUGCGUUGCGCCGC- -5'
22898 5' -54.8 NC_005137.2 + 16897 0.78 0.290899
Target:  5'- cGGAAgCgGUGCAGACGC-ACGCGGCGc -3'
miRNA:   3'- -UUUUgGgCGCGUUUGCGuUGCGCCGC- -5'
22898 5' -54.8 NC_005137.2 + 121539 0.75 0.446393
Target:  5'- uGAACCgGCGCGAAaGCAccACGUGGCa -3'
miRNA:   3'- uUUUGGgCGCGUUUgCGU--UGCGCCGc -5'
22898 5' -54.8 NC_005137.2 + 129499 0.74 0.474902
Target:  5'- uGAACaaCGCGUcgGCGCcGCGCGGCGg -3'
miRNA:   3'- uUUUGg-GCGCGuuUGCGuUGCGCCGC- -5'
22898 5' -54.8 NC_005137.2 + 61240 0.74 0.49342
Target:  5'- -uAAUgCGCGCAAACGCGGCGgauuaguaauuguCGGCGu -3'
miRNA:   3'- uuUUGgGCGCGUUUGCGUUGC-------------GCCGC- -5'
22898 5' -54.8 NC_005137.2 + 106993 0.74 0.494404
Target:  5'- uGAAGCCaucaacgugguUGCGCAAACGCuGCGCaGCGa -3'
miRNA:   3'- -UUUUGG-----------GCGCGUUUGCGuUGCGcCGC- -5'
22898 5' -54.8 NC_005137.2 + 50100 0.73 0.524315
Target:  5'- ----gCCGCGCAAAUGCGcgugaGCGUGGCc -3'
miRNA:   3'- uuuugGGCGCGUUUGCGU-----UGCGCCGc -5'
22898 5' -54.8 NC_005137.2 + 95599 0.73 0.534441
Target:  5'- --cGCCCGCGCAcuguGCGCGACGU-GCu -3'
miRNA:   3'- uuuUGGGCGCGUu---UGCGUUGCGcCGc -5'
22898 5' -54.8 NC_005137.2 + 104512 0.73 0.554891
Target:  5'- ----gCCGCGuCAAACGCGACaaGCGGCc -3'
miRNA:   3'- uuuugGGCGC-GUUUGCGUUG--CGCCGc -5'
22898 5' -54.8 NC_005137.2 + 96399 0.73 0.565202
Target:  5'- uGGAgCCGCGCcGAcCGCuacccGCGCGGCGa -3'
miRNA:   3'- uUUUgGGCGCGuUU-GCGu----UGCGCCGC- -5'
22898 5' -54.8 NC_005137.2 + 37333 0.72 0.606872
Target:  5'- uGGGCCUguuGCGCAucuACGCGGC-CGGCGg -3'
miRNA:   3'- uUUUGGG---CGCGUu--UGCGUUGcGCCGC- -5'
22898 5' -54.8 NC_005137.2 + 8594 0.72 0.614211
Target:  5'- cAAAACCCGCGUcuuAAcagcuauuugcaggGCGCuAAgGCGGCGg -3'
miRNA:   3'- -UUUUGGGCGCG---UU--------------UGCG-UUgCGCCGC- -5'
22898 5' -54.8 NC_005137.2 + 33536 0.72 0.617358
Target:  5'- --cACCUGCGCGAGCGUcACGCcGCc -3'
miRNA:   3'- uuuUGGGCGCGUUUGCGuUGCGcCGc -5'
22898 5' -54.8 NC_005137.2 + 8487 0.72 0.627856
Target:  5'- --uGCCCGaUGCAGGCuuGCAcgugaaaaagacGCGCGGCGa -3'
miRNA:   3'- uuuUGGGC-GCGUUUG--CGU------------UGCGCCGC- -5'
22898 5' -54.8 NC_005137.2 + 120286 0.72 0.627856
Target:  5'- ----gCCGaCGCGuGCGCGAUGCGGUGc -3'
miRNA:   3'- uuuugGGC-GCGUuUGCGUUGCGCCGC- -5'
22898 5' -54.8 NC_005137.2 + 71368 0.72 0.627856
Target:  5'- ----gCCGCGUuGACugucgGCGACGCGGCGu -3'
miRNA:   3'- uuuugGGCGCGuUUG-----CGUUGCGCCGC- -5'
22898 5' -54.8 NC_005137.2 + 32631 0.72 0.627856
Target:  5'- aAAAGCCCGuCGCGAcgGCGCcaAAC-CGGCGc -3'
miRNA:   3'- -UUUUGGGC-GCGUU--UGCG--UUGcGCCGC- -5'
22898 5' -54.8 NC_005137.2 + 49063 0.71 0.638357
Target:  5'- ----gCCGUGCGAGCGCAcUGCgGGCGc -3'
miRNA:   3'- uuuugGGCGCGUUUGCGUuGCG-CCGC- -5'
22898 5' -54.8 NC_005137.2 + 81572 0.71 0.638357
Target:  5'- cAAGCUCGCGgGucaaaucuuGACGCGugACGCGGCa -3'
miRNA:   3'- uUUUGGGCGCgU---------UUGCGU--UGCGCCGc -5'
22898 5' -54.8 NC_005137.2 + 62204 0.71 0.659336
Target:  5'- ---uCUCGCGCucuACGCuuucGCGCGGCa -3'
miRNA:   3'- uuuuGGGCGCGuu-UGCGu---UGCGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.