miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22898 5' -54.8 NC_005137.2 + 949 0.67 0.851319
Target:  5'- --cGCCCGU-CAucGGCGCAauaagGCGCGGCu -3'
miRNA:   3'- uuuUGGGCGcGU--UUGCGU-----UGCGCCGc -5'
22898 5' -54.8 NC_005137.2 + 2571 0.66 0.889015
Target:  5'- gAGGugCaGCGCAuuAACGCAG-GUGGCGa -3'
miRNA:   3'- -UUUugGgCGCGU--UUGCGUUgCGCCGC- -5'
22898 5' -54.8 NC_005137.2 + 6020 0.66 0.89586
Target:  5'- ---uCCCGCcCGAuuuccaACGCAGCGCaGCGc -3'
miRNA:   3'- uuuuGGGCGcGUU------UGCGUUGCGcCGC- -5'
22898 5' -54.8 NC_005137.2 + 6058 0.69 0.7515
Target:  5'- -cGGCgCCGCGUucauCGCAACcCGGCGa -3'
miRNA:   3'- uuUUG-GGCGCGuuu-GCGUUGcGCCGC- -5'
22898 5' -54.8 NC_005137.2 + 6980 0.68 0.820899
Target:  5'- cGAugCUGCGCAcacgGACGagcggucgccgggcaCAACGUGGCGc -3'
miRNA:   3'- uUUugGGCGCGU----UUGC---------------GUUGCGCCGC- -5'
22898 5' -54.8 NC_005137.2 + 8386 0.69 0.790017
Target:  5'- --cAUCaCGCGCAGuaacgaugugccACGCAucCGCGGCGu -3'
miRNA:   3'- uuuUGG-GCGCGUU------------UGCGUu-GCGCCGC- -5'
22898 5' -54.8 NC_005137.2 + 8487 0.72 0.627856
Target:  5'- --uGCCCGaUGCAGGCuuGCAcgugaaaaagacGCGCGGCGa -3'
miRNA:   3'- uuuUGGGC-GCGUUUG--CGU------------UGCGCCGC- -5'
22898 5' -54.8 NC_005137.2 + 8594 0.72 0.614211
Target:  5'- cAAAACCCGCGUcuuAAcagcuauuugcaggGCGCuAAgGCGGCGg -3'
miRNA:   3'- -UUUUGGGCGCG---UU--------------UGCG-UUgCGCCGC- -5'
22898 5' -54.8 NC_005137.2 + 11267 0.68 0.823529
Target:  5'- -cGGCCCauuaGCAugcagguugccaugGGCGCuGCGCGGCGg -3'
miRNA:   3'- uuUUGGGcg--CGU--------------UUGCGuUGCGCCGC- -5'
22898 5' -54.8 NC_005137.2 + 11774 0.66 0.902463
Target:  5'- aAAGGCUggaagUGCGCAGuCGCAAgGCGGgGc -3'
miRNA:   3'- -UUUUGG-----GCGCGUUuGCGUUgCGCCgC- -5'
22898 5' -54.8 NC_005137.2 + 13743 0.68 0.834731
Target:  5'- gAAGACgCCGUGC-AGCGCGucauguucaGCGGCa -3'
miRNA:   3'- -UUUUG-GGCGCGuUUGCGUug-------CGCCGc -5'
22898 5' -54.8 NC_005137.2 + 16897 0.78 0.290899
Target:  5'- cGGAAgCgGUGCAGACGC-ACGCGGCGc -3'
miRNA:   3'- -UUUUgGgCGCGUUUGCGuUGCGCCGC- -5'
22898 5' -54.8 NC_005137.2 + 18132 0.68 0.846427
Target:  5'- -cAGCCCGCGUgcuaucacuuggaccGAGcCGCAGCGauGCGc -3'
miRNA:   3'- uuUUGGGCGCG---------------UUU-GCGUUGCgcCGC- -5'
22898 5' -54.8 NC_005137.2 + 20276 0.66 0.908821
Target:  5'- --cGCCCgGCGCAcaAGCGCucUGCGcGCa -3'
miRNA:   3'- uuuUGGG-CGCGU--UUGCGuuGCGC-CGc -5'
22898 5' -54.8 NC_005137.2 + 20554 0.68 0.843126
Target:  5'- ---cCCCGUGUAcGCGCcggcCGCGGUGu -3'
miRNA:   3'- uuuuGGGCGCGUuUGCGuu--GCGCCGC- -5'
22898 5' -54.8 NC_005137.2 + 21326 0.68 0.843126
Target:  5'- aAGAACCgGCcaGCGAACGCuuAACGCguuuagcuuuGGCGa -3'
miRNA:   3'- -UUUUGGgCG--CGUUUGCG--UUGCG----------CCGC- -5'
22898 5' -54.8 NC_005137.2 + 27913 0.67 0.851319
Target:  5'- --cGCCCG-GCAAccaauuGCGC-ACGCGGUa -3'
miRNA:   3'- uuuUGGGCgCGUU------UGCGuUGCGCCGc -5'
22898 5' -54.8 NC_005137.2 + 28055 0.68 0.826142
Target:  5'- -cGACgCGCGCugggaugcgccaGAcggcuguacACGCAGCGCGGCc -3'
miRNA:   3'- uuUUGgGCGCG------------UU---------UGCGUUGCGCCGc -5'
22898 5' -54.8 NC_005137.2 + 29972 0.66 0.889015
Target:  5'- uAGACCCGCGCAAaauuauuguggGCGUugccauguacGGCcGCGGUu -3'
miRNA:   3'- uUUUGGGCGCGUU-----------UGCG----------UUG-CGCCGc -5'
22898 5' -54.8 NC_005137.2 + 30742 0.67 0.86707
Target:  5'- uGAAugCCGCGaCGcGCGCccgugcguUGCGGCGc -3'
miRNA:   3'- -UUUugGGCGC-GUuUGCGuu------GCGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.