miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22898 5' -54.8 NC_005137.2 + 80257 0.69 0.76132
Target:  5'- ----aCgGCGCGAACGC--CGUGGCGg -3'
miRNA:   3'- uuuugGgCGCGUUUGCGuuGCGCCGC- -5'
22898 5' -54.8 NC_005137.2 + 79729 0.7 0.700941
Target:  5'- --uGCCCGcCGCAAAuUGCGACGCaauGGCc -3'
miRNA:   3'- uuuUGGGC-GCGUUU-GCGUUGCG---CCGc -5'
22898 5' -54.8 NC_005137.2 + 31645 0.7 0.71019
Target:  5'- --cACgCGCGCGGACGCGACcacgcugugcauaGCGGaCGa -3'
miRNA:   3'- uuuUGgGCGCGUUUGCGUUG-------------CGCC-GC- -5'
22898 5' -54.8 NC_005137.2 + 48761 0.7 0.711214
Target:  5'- cAAGgCgGCGCGAuCGUugGACGCGGCGc -3'
miRNA:   3'- uUUUgGgCGCGUUuGCG--UUGCGCCGC- -5'
22898 5' -54.8 NC_005137.2 + 125007 0.7 0.711214
Target:  5'- gGGAugCCGCaccgGCGAucgguUGCGGCGUGGCGc -3'
miRNA:   3'- -UUUugGGCG----CGUUu----GCGUUGCGCCGC- -5'
22898 5' -54.8 NC_005137.2 + 63109 0.7 0.731539
Target:  5'- gAGGGCuuGCGCuucGCGCcgguCGCGGCu -3'
miRNA:   3'- -UUUUGggCGCGuu-UGCGuu--GCGCCGc -5'
22898 5' -54.8 NC_005137.2 + 65237 0.7 0.738571
Target:  5'- -uGACCCGUuuGCAAACGCcgucugguacagcgAGCccgGCGGCGa -3'
miRNA:   3'- uuUUGGGCG--CGUUUGCG--------------UUG---CGCCGC- -5'
22898 5' -54.8 NC_005137.2 + 79668 0.69 0.7515
Target:  5'- ---gUuuGUGCAGGCGCGGCGgCGGaCGa -3'
miRNA:   3'- uuuuGggCGCGUUUGCGUUGC-GCC-GC- -5'
22898 5' -54.8 NC_005137.2 + 38651 0.69 0.76132
Target:  5'- -cGACgCUGgGCAGGCGCGcguUGCGGCa -3'
miRNA:   3'- uuUUG-GGCgCGUUUGCGUu--GCGCCGc -5'
22898 5' -54.8 NC_005137.2 + 108055 0.71 0.669795
Target:  5'- aGAAACUuugCGCGUGGaacACGCGACGCGGgGc -3'
miRNA:   3'- -UUUUGG---GCGCGUU---UGCGUUGCGCCgC- -5'
22898 5' -54.8 NC_005137.2 + 68661 0.71 0.669795
Target:  5'- -cAACgUGCGCAcGCGCGugGCGGa- -3'
miRNA:   3'- uuUUGgGCGCGUuUGCGUugCGCCgc -5'
22898 5' -54.8 NC_005137.2 + 49676 0.71 0.659336
Target:  5'- ---uUUCGCGaCAAugGC-GCGCGGCGg -3'
miRNA:   3'- uuuuGGGCGC-GUUugCGuUGCGCCGC- -5'
22898 5' -54.8 NC_005137.2 + 61240 0.74 0.49342
Target:  5'- -uAAUgCGCGCAAACGCGGCGgauuaguaauuguCGGCGu -3'
miRNA:   3'- uuUUGgGCGCGUUUGCGUUGC-------------GCCGC- -5'
22898 5' -54.8 NC_005137.2 + 106993 0.74 0.494404
Target:  5'- uGAAGCCaucaacgugguUGCGCAAACGCuGCGCaGCGa -3'
miRNA:   3'- -UUUUGG-----------GCGCGUUUGCGuUGCGcCGC- -5'
22898 5' -54.8 NC_005137.2 + 50100 0.73 0.524315
Target:  5'- ----gCCGCGCAAAUGCGcgugaGCGUGGCc -3'
miRNA:   3'- uuuugGGCGCGUUUGCGU-----UGCGCCGc -5'
22898 5' -54.8 NC_005137.2 + 95599 0.73 0.534441
Target:  5'- --cGCCCGCGCAcuguGCGCGACGU-GCu -3'
miRNA:   3'- uuuUGGGCGCGUu---UGCGUUGCGcCGc -5'
22898 5' -54.8 NC_005137.2 + 96399 0.73 0.565202
Target:  5'- uGGAgCCGCGCcGAcCGCuacccGCGCGGCGa -3'
miRNA:   3'- uUUUgGGCGCGuUU-GCGu----UGCGCCGC- -5'
22898 5' -54.8 NC_005137.2 + 71368 0.72 0.627856
Target:  5'- ----gCCGCGUuGACugucgGCGACGCGGCGu -3'
miRNA:   3'- uuuugGGCGCGuUUG-----CGUUGCGCCGC- -5'
22898 5' -54.8 NC_005137.2 + 49063 0.71 0.638357
Target:  5'- ----gCCGUGCGAGCGCAcUGCgGGCGc -3'
miRNA:   3'- uuuugGGCGCGUUUGCGUuGCG-CCGC- -5'
22898 5' -54.8 NC_005137.2 + 81572 0.71 0.638357
Target:  5'- cAAGCUCGCGgGucaaaucuuGACGCGugACGCGGCa -3'
miRNA:   3'- uUUUGGGCGCgU---------UUGCGU--UGCGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.