miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22904 3' -52.6 NC_005137.2 + 99958 0.72 0.776085
Target:  5'- aCAACGGccgCGGCCGcgcGCcucuUCGUGCGCCa -3'
miRNA:   3'- cGUUGCUaa-GCCGGU---UG----AGCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 18568 0.72 0.776085
Target:  5'- cGCcGCGuccaaCGGCCGACUCcaACGCCg -3'
miRNA:   3'- -CGuUGCuaa--GCCGGUUGAGcgUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 55764 0.72 0.78462
Target:  5'- aGCGcccGCGGUcacggccaucauuUCGGCCAGCagCGaaaACGCCg -3'
miRNA:   3'- -CGU---UGCUA-------------AGCCGGUUGa-GCg--UGCGG- -5'
22904 3' -52.6 NC_005137.2 + 68393 0.72 0.785561
Target:  5'- -gGACGcgUCGGCCGagcacaucgACUUGUACGUg -3'
miRNA:   3'- cgUUGCuaAGCCGGU---------UGAGCGUGCGg -5'
22904 3' -52.6 NC_005137.2 + 99198 0.72 0.794893
Target:  5'- cGCGGC-AUUgGGCCGccGCaUCGCuGCGCCa -3'
miRNA:   3'- -CGUUGcUAAgCCGGU--UG-AGCG-UGCGG- -5'
22904 3' -52.6 NC_005137.2 + 88816 0.71 0.80407
Target:  5'- cGCGucGCGucccugUCGGCgGACgcgaCGCugGCCa -3'
miRNA:   3'- -CGU--UGCua----AGCCGgUUGa---GCGugCGG- -5'
22904 3' -52.6 NC_005137.2 + 12693 0.71 0.80407
Target:  5'- aGCAGCGcgUCGGa--ACg-GCGCGCCa -3'
miRNA:   3'- -CGUUGCuaAGCCgguUGagCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 31605 0.71 0.81219
Target:  5'- uGCAACGcacgcuggauuuuAUggCGGCCAACggucagUGCACGCg -3'
miRNA:   3'- -CGUUGC-------------UAa-GCCGGUUGa-----GCGUGCGg -5'
22904 3' -52.6 NC_005137.2 + 104065 0.71 0.813084
Target:  5'- cGUGGCGccuucgucGUgcUUGGCCGGCUCGUugugACGCCa -3'
miRNA:   3'- -CGUUGC--------UA--AGCCGGUUGAGCG----UGCGG- -5'
22904 3' -52.6 NC_005137.2 + 69608 0.71 0.813084
Target:  5'- cGCGGCGuuucuuacgUCGGCCGccaacgccaucaACUCGCcggcCGCCc -3'
miRNA:   3'- -CGUUGCua-------AGCCGGU------------UGAGCGu---GCGG- -5'
22904 3' -52.6 NC_005137.2 + 58660 0.71 0.813084
Target:  5'- uGCAcGCGGagCGGCgCAGCUCGCGCa-- -3'
miRNA:   3'- -CGU-UGCUaaGCCG-GUUGAGCGUGcgg -5'
22904 3' -52.6 NC_005137.2 + 8553 0.71 0.821926
Target:  5'- cCAAUGugcgcUCGGCCGACggaguagacCGCGCGCUg -3'
miRNA:   3'- cGUUGCua---AGCCGGUUGa--------GCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 19074 0.71 0.830587
Target:  5'- cGCucaccACGg--CGGCCAaagcuuugACUCGCAuCGCCa -3'
miRNA:   3'- -CGu----UGCuaaGCCGGU--------UGAGCGU-GCGG- -5'
22904 3' -52.6 NC_005137.2 + 71912 0.71 0.830587
Target:  5'- aGCAGCGAUUCGGUgCAAgUCG-ACcCCg -3'
miRNA:   3'- -CGUUGCUAAGCCG-GUUgAGCgUGcGG- -5'
22904 3' -52.6 NC_005137.2 + 84956 0.71 0.839058
Target:  5'- uGCAGCGg--CGGCaUAAcCUCGUugGCGCCg -3'
miRNA:   3'- -CGUUGCuaaGCCG-GUU-GAGCG--UGCGG- -5'
22904 3' -52.6 NC_005137.2 + 110435 0.7 0.853806
Target:  5'- cGCGACGGUgagcgugcacaccgCGGCCGGCgCGUAcacggggucacuaacCGCCa -3'
miRNA:   3'- -CGUUGCUAa-------------GCCGGUUGaGCGU---------------GCGG- -5'
22904 3' -52.6 NC_005137.2 + 49340 0.7 0.855403
Target:  5'- gGCAGCGAUUCGGCCAuGCuUUGUAaaGUa -3'
miRNA:   3'- -CGUUGCUAAGCCGGU-UG-AGCGUg-CGg -5'
22904 3' -52.6 NC_005137.2 + 94360 0.7 0.855403
Target:  5'- -uGACGAgcgCGGCCGagguggucauugACUCGgUGCGCCc -3'
miRNA:   3'- cgUUGCUaa-GCCGGU------------UGAGC-GUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 119053 0.7 0.862485
Target:  5'- cGCGuaauuCGAUUCGGCCAugacaucACUCGguCGg- -3'
miRNA:   3'- -CGUu----GCUAAGCCGGU-------UGAGCguGCgg -5'
22904 3' -52.6 NC_005137.2 + 35106 0.7 0.863261
Target:  5'- gGCAACGGUaCGGUCAccGCgaCGCACcauGCCc -3'
miRNA:   3'- -CGUUGCUAaGCCGGU--UGa-GCGUG---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.