miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22904 3' -52.6 NC_005137.2 + 25138 1.14 0.00268
Target:  5'- uGCAACGAUUCGGCCAACUCGCACGCCu -3'
miRNA:   3'- -CGUUGCUAAGCCGGUUGAGCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 116286 0.78 0.442653
Target:  5'- -uGugGAagaCGGCCAGCaCGCACGCCa -3'
miRNA:   3'- cgUugCUaa-GCCGGUUGaGCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 67541 0.76 0.540317
Target:  5'- cGCcGCGAggCGGCaCAAa-CGCGCGCCg -3'
miRNA:   3'- -CGuUGCUaaGCCG-GUUgaGCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 118036 0.76 0.581474
Target:  5'- uGCGACGAUgCGuGCCAACcCGUuuguggccGCGCCg -3'
miRNA:   3'- -CGUUGCUAaGC-CGGUUGaGCG--------UGCGG- -5'
22904 3' -52.6 NC_005137.2 + 57197 0.76 0.581474
Target:  5'- cGCGACGcguuUUUGGCCAACcugcaGCAgGCCg -3'
miRNA:   3'- -CGUUGCu---AAGCCGGUUGag---CGUgCGG- -5'
22904 3' -52.6 NC_005137.2 + 42169 0.75 0.591877
Target:  5'- uCGugGAgUUGGCCAGCgUCGCGucCGCCg -3'
miRNA:   3'- cGUugCUaAGCCGGUUG-AGCGU--GCGG- -5'
22904 3' -52.6 NC_005137.2 + 71000 0.75 0.612765
Target:  5'- uGC-ACGAccgCGGCCuAAUUCGCgGCGCCa -3'
miRNA:   3'- -CGuUGCUaa-GCCGG-UUGAGCG-UGCGG- -5'
22904 3' -52.6 NC_005137.2 + 123979 0.75 0.623236
Target:  5'- uGCGGCGAcgaGGCCGugACgcgCGUGCGCCa -3'
miRNA:   3'- -CGUUGCUaagCCGGU--UGa--GCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 34684 0.74 0.644191
Target:  5'- -aAACGuUUCGGCaguccacACUUGCGCGCCg -3'
miRNA:   3'- cgUUGCuAAGCCGgu-----UGAGCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 37476 0.74 0.654658
Target:  5'- aCGACGcaguuUUCGGCCGACgcgUGCauuuGCGCCg -3'
miRNA:   3'- cGUUGCu----AAGCCGGUUGa--GCG----UGCGG- -5'
22904 3' -52.6 NC_005137.2 + 97997 0.73 0.694182
Target:  5'- gGCGugGGUgcgcccgccaagUGGCCAGCgUGCACGUCg -3'
miRNA:   3'- -CGUugCUAa-----------GCCGGUUGaGCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 75437 0.73 0.706525
Target:  5'- cCAAauuugCGGCCAACUUGCACGUg -3'
miRNA:   3'- cGUUgcuaaGCCGGUUGAGCGUGCGg -5'
22904 3' -52.6 NC_005137.2 + 110718 0.73 0.706525
Target:  5'- cGCAACGGUgugCGcGCagagcGCUUGUGCGCCg -3'
miRNA:   3'- -CGUUGCUAa--GC-CGgu---UGAGCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 26932 0.73 0.716739
Target:  5'- aCAACGAgcCGGCCAGCaCGacgaagGCGCCa -3'
miRNA:   3'- cGUUGCUaaGCCGGUUGaGCg-----UGCGG- -5'
22904 3' -52.6 NC_005137.2 + 47847 0.73 0.746887
Target:  5'- cGCAACGuccUUGGCCAcaaacuugACUUGUugGUCg -3'
miRNA:   3'- -CGUUGCua-AGCCGGU--------UGAGCGugCGG- -5'
22904 3' -52.6 NC_005137.2 + 45448 0.73 0.746887
Target:  5'- aGUAGCGgg-CGGCgCAGCacgCGCACGCg -3'
miRNA:   3'- -CGUUGCuaaGCCG-GUUGa--GCGUGCGg -5'
22904 3' -52.6 NC_005137.2 + 108155 0.73 0.746887
Target:  5'- gGCGGCGGcgUCGGUaug--CGCGCGCCc -3'
miRNA:   3'- -CGUUGCUa-AGCCGguugaGCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 95473 0.72 0.756739
Target:  5'- uGCAACGuacCGGUCGGa-UGCGCGCCg -3'
miRNA:   3'- -CGUUGCuaaGCCGGUUgaGCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 100129 0.72 0.756739
Target:  5'- gGUuuCGAagCGGCaCAGCUCGCccacguacgggcGCGCCg -3'
miRNA:   3'- -CGuuGCUaaGCCG-GUUGAGCG------------UGCGG- -5'
22904 3' -52.6 NC_005137.2 + 70512 0.72 0.766475
Target:  5'- aGCAcguguuUGAUUUGGCCAccgaccgacaGCggUGCACGCCg -3'
miRNA:   3'- -CGUu-----GCUAAGCCGGU----------UGa-GCGUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.