miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22904 3' -52.6 NC_005137.2 + 342 0.67 0.948422
Target:  5'- aGCAACGGUUaGGgCGAgUUGgGCGCa -3'
miRNA:   3'- -CGUUGCUAAgCCgGUUgAGCgUGCGg -5'
22904 3' -52.6 NC_005137.2 + 962 0.7 0.870901
Target:  5'- cGCAAUaaGGcgCGGCUuuAGCUUGCAuCGCCa -3'
miRNA:   3'- -CGUUG--CUaaGCCGG--UUGAGCGU-GCGG- -5'
22904 3' -52.6 NC_005137.2 + 1205 0.7 0.878315
Target:  5'- -gGugGAgUCGGCCAugUUGUgcgaGCGUCg -3'
miRNA:   3'- cgUugCUaAGCCGGUugAGCG----UGCGG- -5'
22904 3' -52.6 NC_005137.2 + 1571 0.7 0.870901
Target:  5'- cGCGAUGAUUCuauuguGUUAACUUGCauguACGCCg -3'
miRNA:   3'- -CGUUGCUAAGc-----CGGUUGAGCG----UGCGG- -5'
22904 3' -52.6 NC_005137.2 + 1578 0.66 0.977594
Target:  5'- uCAAUGccUUGGCCAAauuuaccgacccguCggCGCACGCCu -3'
miRNA:   3'- cGUUGCuaAGCCGGUU--------------Ga-GCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 1673 0.66 0.973187
Target:  5'- gGUuuCGGcgCGGUCAGCaaCGCGCGCa -3'
miRNA:   3'- -CGuuGCUaaGCCGGUUGa-GCGUGCGg -5'
22904 3' -52.6 NC_005137.2 + 4294 0.68 0.943944
Target:  5'- cGguGCGGUUaaGGCCGuGCgugcaaUGCACGCCg -3'
miRNA:   3'- -CguUGCUAAg-CCGGU-UGa-----GCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 6995 0.66 0.978312
Target:  5'- -gGACGAgcggUCgccgGGCaCAACguggCGCACGCg -3'
miRNA:   3'- cgUUGCUa---AG----CCG-GUUGa---GCGUGCGg -5'
22904 3' -52.6 NC_005137.2 + 8553 0.71 0.821926
Target:  5'- cCAAUGugcgcUCGGCCGACggaguagacCGCGCGCUg -3'
miRNA:   3'- cGUUGCua---AGCCGGUUGa--------GCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 8759 0.67 0.952657
Target:  5'- gGCGGCGAgaCGGCUGacGCUUGUcUGCUg -3'
miRNA:   3'- -CGUUGCUaaGCCGGU--UGAGCGuGCGG- -5'
22904 3' -52.6 NC_005137.2 + 11301 0.66 0.967237
Target:  5'- cGCGGCGGgaugCGuacgugcuaaGCUGugUgCGCGCGCCg -3'
miRNA:   3'- -CGUUGCUaa--GC----------CGGUugA-GCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 12506 0.66 0.974808
Target:  5'- -uGACGAUggaCGGUCGGuCUacggcgcacaugaGCACGCCa -3'
miRNA:   3'- cgUUGCUAa--GCCGGUU-GAg------------CGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 12693 0.71 0.80407
Target:  5'- aGCAGCGcgUCGGa--ACg-GCGCGCCa -3'
miRNA:   3'- -CGUUGCuaAGCCgguUGagCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 12952 0.67 0.952657
Target:  5'- aGguGCGGUUugUGGCCAAgaaaugCGCACGUg -3'
miRNA:   3'- -CguUGCUAA--GCCGGUUga----GCGUGCGg -5'
22904 3' -52.6 NC_005137.2 + 12954 0.66 0.975849
Target:  5'- cGCuGCGGcgCGGCCAcaaACgguugGCACGCa -3'
miRNA:   3'- -CGuUGCUaaGCCGGU---UGag---CGUGCGg -5'
22904 3' -52.6 NC_005137.2 + 16282 0.7 0.878315
Target:  5'- aCAACGAUcCGGCUAACaCGUACGa- -3'
miRNA:   3'- cGUUGCUAaGCCGGUUGaGCGUGCgg -5'
22904 3' -52.6 NC_005137.2 + 18568 0.72 0.776085
Target:  5'- cGCcGCGuccaaCGGCCGACUCcaACGCCg -3'
miRNA:   3'- -CGuUGCuaa--GCCGGUUGAGcgUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 19074 0.71 0.830587
Target:  5'- cGCucaccACGg--CGGCCAaagcuuugACUCGCAuCGCCa -3'
miRNA:   3'- -CGu----UGCuaaGCCGGU--------UGAGCGU-GCGG- -5'
22904 3' -52.6 NC_005137.2 + 20970 0.69 0.8855
Target:  5'- uGCGGCGcgcGUUUuGCCGcGCUUGCACGCa -3'
miRNA:   3'- -CGUUGC---UAAGcCGGU-UGAGCGUGCGg -5'
22904 3' -52.6 NC_005137.2 + 21438 0.67 0.956651
Target:  5'- cGUGGCGGcugUGGCCucUUUGUGCGCCu -3'
miRNA:   3'- -CGUUGCUaa-GCCGGuuGAGCGUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.