miRNA display CGI


Results 1 - 20 of 121 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22904 3' -52.6 NC_005137.2 + 22441 0.7 0.863261
Target:  5'- uCGGCGAUUUGGgCAACgugCGCucCGUCg -3'
miRNA:   3'- cGUUGCUAAGCCgGUUGa--GCGu-GCGG- -5'
22904 3' -52.6 NC_005137.2 + 99958 0.72 0.776085
Target:  5'- aCAACGGccgCGGCCGcgcGCcucuUCGUGCGCCa -3'
miRNA:   3'- cGUUGCUaa-GCCGGU---UG----AGCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 68393 0.72 0.785561
Target:  5'- -gGACGcgUCGGCCGagcacaucgACUUGUACGUg -3'
miRNA:   3'- cgUUGCuaAGCCGGU---------UGAGCGUGCGg -5'
22904 3' -52.6 NC_005137.2 + 12693 0.71 0.80407
Target:  5'- aGCAGCGcgUCGGa--ACg-GCGCGCCa -3'
miRNA:   3'- -CGUUGCuaAGCCgguUGagCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 31605 0.71 0.81219
Target:  5'- uGCAACGcacgcuggauuuuAUggCGGCCAACggucagUGCACGCg -3'
miRNA:   3'- -CGUUGC-------------UAa-GCCGGUUGa-----GCGUGCGg -5'
22904 3' -52.6 NC_005137.2 + 104065 0.71 0.813084
Target:  5'- cGUGGCGccuucgucGUgcUUGGCCGGCUCGUugugACGCCa -3'
miRNA:   3'- -CGUUGC--------UA--AGCCGGUUGAGCG----UGCGG- -5'
22904 3' -52.6 NC_005137.2 + 71912 0.71 0.830587
Target:  5'- aGCAGCGAUUCGGUgCAAgUCG-ACcCCg -3'
miRNA:   3'- -CGUUGCUAAGCCG-GUUgAGCgUGcGG- -5'
22904 3' -52.6 NC_005137.2 + 110435 0.7 0.853806
Target:  5'- cGCGACGGUgagcgugcacaccgCGGCCGGCgCGUAcacggggucacuaacCGCCa -3'
miRNA:   3'- -CGUUGCUAa-------------GCCGGUUGaGCGU---------------GCGG- -5'
22904 3' -52.6 NC_005137.2 + 94360 0.7 0.855403
Target:  5'- -uGACGAgcgCGGCCGagguggucauugACUCGgUGCGCCc -3'
miRNA:   3'- cgUUGCUaa-GCCGGU------------UGAGC-GUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 95473 0.72 0.756739
Target:  5'- uGCAACGuacCGGUCGGa-UGCGCGCCg -3'
miRNA:   3'- -CGUUGCuaaGCCGGUUgaGCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 100129 0.72 0.756739
Target:  5'- gGUuuCGAagCGGCaCAGCUCGCccacguacgggcGCGCCg -3'
miRNA:   3'- -CGuuGCUaaGCCG-GUUGAGCG------------UGCGG- -5'
22904 3' -52.6 NC_005137.2 + 108155 0.73 0.746887
Target:  5'- gGCGGCGGcgUCGGUaug--CGCGCGCCc -3'
miRNA:   3'- -CGUUGCUa-AGCCGguugaGCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 67541 0.76 0.540317
Target:  5'- cGCcGCGAggCGGCaCAAa-CGCGCGCCg -3'
miRNA:   3'- -CGuUGCUaaGCCG-GUUgaGCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 118036 0.76 0.581474
Target:  5'- uGCGACGAUgCGuGCCAACcCGUuuguggccGCGCCg -3'
miRNA:   3'- -CGUUGCUAaGC-CGGUUGaGCG--------UGCGG- -5'
22904 3' -52.6 NC_005137.2 + 42169 0.75 0.591877
Target:  5'- uCGugGAgUUGGCCAGCgUCGCGucCGCCg -3'
miRNA:   3'- cGUugCUaAGCCGGUUG-AGCGU--GCGG- -5'
22904 3' -52.6 NC_005137.2 + 97997 0.73 0.694182
Target:  5'- gGCGugGGUgcgcccgccaagUGGCCAGCgUGCACGUCg -3'
miRNA:   3'- -CGUugCUAa-----------GCCGGUUGaGCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 75437 0.73 0.706525
Target:  5'- cCAAauuugCGGCCAACUUGCACGUg -3'
miRNA:   3'- cGUUgcuaaGCCGGUUGAGCGUGCGg -5'
22904 3' -52.6 NC_005137.2 + 110718 0.73 0.706525
Target:  5'- cGCAACGGUgugCGcGCagagcGCUUGUGCGCCg -3'
miRNA:   3'- -CGUUGCUAa--GC-CGgu---UGAGCGUGCGG- -5'
22904 3' -52.6 NC_005137.2 + 45448 0.73 0.746887
Target:  5'- aGUAGCGgg-CGGCgCAGCacgCGCACGCg -3'
miRNA:   3'- -CGUUGCuaaGCCG-GUUGa--GCGUGCGg -5'
22904 3' -52.6 NC_005137.2 + 47847 0.73 0.746887
Target:  5'- cGCAACGuccUUGGCCAcaaacuugACUUGUugGUCg -3'
miRNA:   3'- -CGUUGCua-AGCCGGU--------UGAGCGugCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.