miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22909 5' -55.3 NC_005137.2 + 64961 0.66 0.933363
Target:  5'- gCCAACGuGCCGACgugCCAACuuucacguuuGCCa---- -3'
miRNA:   3'- -GGUUGC-CGGCUGa--GGUUG----------CGGcauga -5'
22909 5' -55.3 NC_005137.2 + 104084 0.66 0.92821
Target:  5'- ---uUGGCCGGCUCguuguGACGCCauGUGCg -3'
miRNA:   3'- gguuGCCGGCUGAGg----UUGCGG--CAUGa -5'
22909 5' -55.3 NC_005137.2 + 8941 0.66 0.917184
Target:  5'- cCCGGCcGCCGAC-CCGgacACGCCGc--- -3'
miRNA:   3'- -GGUUGcCGGCUGaGGU---UGCGGCauga -5'
22909 5' -55.3 NC_005137.2 + 122702 0.66 0.917184
Target:  5'- gUAACGGCCGuugCCAAgGUuacgCGUGCUg -3'
miRNA:   3'- gGUUGCCGGCugaGGUUgCG----GCAUGA- -5'
22909 5' -55.3 NC_005137.2 + 72179 0.66 0.917184
Target:  5'- aCAACGGCCaACUuuGACGUgaaagaGUACa -3'
miRNA:   3'- gGUUGCCGGcUGAggUUGCGg-----CAUGa -5'
22909 5' -55.3 NC_005137.2 + 31631 0.66 0.915448
Target:  5'- gCCAACGGUCagugcacgcgcgcgGACgcgaCC-ACGCUGUGCa -3'
miRNA:   3'- -GGUUGCCGG--------------CUGa---GGuUGCGGCAUGa -5'
22909 5' -55.3 NC_005137.2 + 20175 0.66 0.911313
Target:  5'- aCAGCGcGCaCGACUCUugcGCGUCGgcggGCg -3'
miRNA:   3'- gGUUGC-CG-GCUGAGGu--UGCGGCa---UGa -5'
22909 5' -55.3 NC_005137.2 + 61398 0.66 0.905203
Target:  5'- -uGGCGGCCGACguaagaAACGCCGc--- -3'
miRNA:   3'- ggUUGCCGGCUGagg---UUGCGGCauga -5'
22909 5' -55.3 NC_005137.2 + 11263 0.67 0.892281
Target:  5'- uCCAGCGGCgcUGACgUCCGcuacGCGCUG-ACg -3'
miRNA:   3'- -GGUUGCCG--GCUG-AGGU----UGCGGCaUGa -5'
22909 5' -55.3 NC_005137.2 + 24528 0.67 0.892281
Target:  5'- uUggUGGCCGuuUgCAucaagACGCCGUACUu -3'
miRNA:   3'- gGuuGCCGGCugAgGU-----UGCGGCAUGA- -5'
22909 5' -55.3 NC_005137.2 + 45672 0.67 0.892281
Target:  5'- aCCAACguGGgCGGCggcgCCAACGCgGaUGCUc -3'
miRNA:   3'- -GGUUG--CCgGCUGa---GGUUGCGgC-AUGA- -5'
22909 5' -55.3 NC_005137.2 + 479 0.67 0.892281
Target:  5'- gCGGCGGCUG-C-CCAGCGUguUGUACa -3'
miRNA:   3'- gGUUGCCGGCuGaGGUUGCG--GCAUGa -5'
22909 5' -55.3 NC_005137.2 + 95627 0.67 0.87119
Target:  5'- uUAACGaGUCGuuuuUUCCGcguGCGCCGUGCg -3'
miRNA:   3'- gGUUGC-CGGCu---GAGGU---UGCGGCAUGa -5'
22909 5' -55.3 NC_005137.2 + 95156 0.67 0.87119
Target:  5'- gCAACGcGCaCGAaugCCAccgcacauugACGCCGUGCa -3'
miRNA:   3'- gGUUGC-CG-GCUga-GGU----------UGCGGCAUGa -5'
22909 5' -55.3 NC_005137.2 + 101439 0.67 0.87119
Target:  5'- uCCAACGGCUGAUUCaauugGCCGgUugUg -3'
miRNA:   3'- -GGUUGCCGGCUGAGguug-CGGC-AugA- -5'
22909 5' -55.3 NC_005137.2 + 118173 0.67 0.87119
Target:  5'- aCGGCcuGGCCGAaaaCUuuGACGCCGUuggcGCUg -3'
miRNA:   3'- gGUUG--CCGGCU---GAggUUGCGGCA----UGA- -5'
22909 5' -55.3 NC_005137.2 + 99958 0.67 0.863722
Target:  5'- aCAACGGCCG-CggCCGcGCGCCucuucGUGCg -3'
miRNA:   3'- gGUUGCCGGCuGa-GGU-UGCGG-----CAUGa -5'
22909 5' -55.3 NC_005137.2 + 31218 0.67 0.861441
Target:  5'- aCCAGCGGUCGcggcACaCCAgcuugaacauggccGCGUCGUGCg -3'
miRNA:   3'- -GGUUGCCGGC----UGaGGU--------------UGCGGCAUGa -5'
22909 5' -55.3 NC_005137.2 + 2436 0.68 0.856045
Target:  5'- gCggUGGCCGACgugCCcGCGCCcgACg -3'
miRNA:   3'- gGuuGCCGGCUGa--GGuUGCGGcaUGa -5'
22909 5' -55.3 NC_005137.2 + 79696 0.68 0.856045
Target:  5'- aCAACGGCgaCGugUuuGAUuuGCCGUACa -3'
miRNA:   3'- gGUUGCCG--GCugAggUUG--CGGCAUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.