miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22910 3' -61.4 NC_005137.2 + 13423 1.11 0.000665
Target:  5'- uACACGUCGCCCGUCAGCCGCACCGGCg -3'
miRNA:   3'- -UGUGCAGCGGGCAGUCGGCGUGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 22452 0.81 0.083192
Target:  5'- gGCaACGUgCGCuCCGUCGGCUGCACCGcGCu -3'
miRNA:   3'- -UG-UGCA-GCG-GGCAGUCGGCGUGGC-CG- -5'
22910 3' -61.4 NC_005137.2 + 42973 0.77 0.168114
Target:  5'- cCACGUgguggccCGCCuCGgcggUGGCCGCGCCGGCa -3'
miRNA:   3'- uGUGCA-------GCGG-GCa---GUCGGCGUGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 74418 0.77 0.168526
Target:  5'- aGCACGUCGCCCGUCGcGUCGgGucccauaaCGGCg -3'
miRNA:   3'- -UGUGCAGCGGGCAGU-CGGCgUg-------GCCG- -5'
22910 3' -61.4 NC_005137.2 + 37667 0.74 0.230395
Target:  5'- aACGCGUCGCCgGUCAGCacgaugcuaGCGCuCaGCg -3'
miRNA:   3'- -UGUGCAGCGGgCAGUCGg--------CGUG-GcCG- -5'
22910 3' -61.4 NC_005137.2 + 85978 0.74 0.235874
Target:  5'- -gACGg-GCCCGUaaagauauuugUGGCCGCGCCGGCc -3'
miRNA:   3'- ugUGCagCGGGCA-----------GUCGGCGUGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 35356 0.73 0.27107
Target:  5'- cGCAC-UUGCCCGUCGG-CGCA-CGGCg -3'
miRNA:   3'- -UGUGcAGCGGGCAGUCgGCGUgGCCG- -5'
22910 3' -61.4 NC_005137.2 + 67367 0.73 0.27107
Target:  5'- gACGCGaugCGCgaCCGUC-GCCGCGgCGGCg -3'
miRNA:   3'- -UGUGCa--GCG--GGCAGuCGGCGUgGCCG- -5'
22910 3' -61.4 NC_005137.2 + 31958 0.73 0.27107
Target:  5'- aGCACGuUCGCCaaacugCAGCCGUacacuauaaauuACCGGCg -3'
miRNA:   3'- -UGUGC-AGCGGgca---GUCGGCG------------UGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 18243 0.72 0.338893
Target:  5'- uGCGCGUCGUUCGUacuGCgGCGCCGcGUc -3'
miRNA:   3'- -UGUGCAGCGGGCAgu-CGgCGUGGC-CG- -5'
22910 3' -61.4 NC_005137.2 + 27391 0.71 0.346315
Target:  5'- cGCACGcCGUCCGgccaaaaguagCGGCCGCugCaGCg -3'
miRNA:   3'- -UGUGCaGCGGGCa----------GUCGGCGugGcCG- -5'
22910 3' -61.4 NC_005137.2 + 88814 0.71 0.377156
Target:  5'- cGCGCGUCGCguccCUGUCGGCggaCGCgacGCUGGCc -3'
miRNA:   3'- -UGUGCAGCG----GGCAGUCG---GCG---UGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 89354 0.7 0.40147
Target:  5'- gGCACGUCGCUCGUCgAGgaUGCAuCCaGCa -3'
miRNA:   3'- -UGUGCAGCGGGCAG-UCg-GCGU-GGcCG- -5'
22910 3' -61.4 NC_005137.2 + 69606 0.7 0.413152
Target:  5'- aACGCGgCGUuucuuaCGUCGGCCGCcaacgccaucaacucGCCGGCc -3'
miRNA:   3'- -UGUGCaGCGg-----GCAGUCGGCG---------------UGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 35510 0.7 0.418223
Target:  5'- cCACGUCagcgaugcGCCCGUgCGGCgCGCauccgACCGGUa -3'
miRNA:   3'- uGUGCAG--------CGGGCA-GUCG-GCG-----UGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 55358 0.7 0.435394
Target:  5'- uGCACGU-GCCCcUUGGCCaCGCUGGCc -3'
miRNA:   3'- -UGUGCAgCGGGcAGUCGGcGUGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 85253 0.69 0.452967
Target:  5'- -gGCGUCGCUguCGUCAGCgGCguaACCcuuGGCg -3'
miRNA:   3'- ugUGCAGCGG--GCAGUCGgCG---UGG---CCG- -5'
22910 3' -61.4 NC_005137.2 + 123174 0.69 0.452967
Target:  5'- uUAUuUUGCCUGUUuGCCGC-CCGGCa -3'
miRNA:   3'- uGUGcAGCGGGCAGuCGGCGuGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 35549 0.69 0.461896
Target:  5'- aACACGgCGCuuGUCaAGacaCGCaccGCCGGCg -3'
miRNA:   3'- -UGUGCaGCGggCAG-UCg--GCG---UGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 34595 0.69 0.470917
Target:  5'- gGCGCGUCGCCgCGcgggUAGCgGUcgGCgCGGCu -3'
miRNA:   3'- -UGUGCAGCGG-GCa---GUCGgCG--UG-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.