Results 1 - 20 of 60 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22910 | 3' | -61.4 | NC_005137.2 | + | 37667 | 0.74 | 0.230395 |
Target: 5'- aACGCGUCGCCgGUCAGCacgaugcuaGCGCuCaGCg -3' miRNA: 3'- -UGUGCAGCGGgCAGUCGg--------CGUG-GcCG- -5' |
|||||||
22910 | 3' | -61.4 | NC_005137.2 | + | 122501 | 0.66 | 0.623437 |
Target: 5'- -uGCGUCGCCgcgCGUCuuuuucacgugcaAGCCuGCAUCGGg -3' miRNA: 3'- ugUGCAGCGG---GCAG-------------UCGG-CGUGGCCg -5' |
|||||||
22910 | 3' | -61.4 | NC_005137.2 | + | 47713 | 0.67 | 0.61453 |
Target: 5'- aGCGgGUCGCCCuGUUuGaCCGCGCUGuuuGCa -3' miRNA: 3'- -UGUgCAGCGGG-CAGuC-GGCGUGGC---CG- -5' |
|||||||
22910 | 3' | -61.4 | NC_005137.2 | + | 22368 | 0.67 | 0.61453 |
Target: 5'- uGCACGUCGgCaggCgAGCacuuuaacccuaCGCACCGGCa -3' miRNA: 3'- -UGUGCAGCgGgcaG-UCG------------GCGUGGCCG- -5' |
|||||||
22910 | 3' | -61.4 | NC_005137.2 | + | 31203 | 0.67 | 0.594781 |
Target: 5'- cCGCGUCGCCCuuGUacCAGCgGUcgCGGCa -3' miRNA: 3'- uGUGCAGCGGG--CA--GUCGgCGugGCCG- -5' |
|||||||
22910 | 3' | -61.4 | NC_005137.2 | + | 20903 | 0.67 | 0.565366 |
Target: 5'- gGCACGUUGaUCGUUA-CCGCAuCUGGCg -3' miRNA: 3'- -UGUGCAGCgGGCAGUcGGCGU-GGCCG- -5' |
|||||||
22910 | 3' | -61.4 | NC_005137.2 | + | 124980 | 0.68 | 0.559525 |
Target: 5'- gGCGCuG-CGCUgCGUUGgaaaucgggcgggauGCCGCACCGGCg -3' miRNA: 3'- -UGUG-CaGCGG-GCAGU---------------CGGCGUGGCCG- -5' |
|||||||
22910 | 3' | -61.4 | NC_005137.2 | + | 123047 | 0.68 | 0.545964 |
Target: 5'- aACACGggcCGCCgGUCgaGGUCGCGgCGcGCa -3' miRNA: 3'- -UGUGCa--GCGGgCAG--UCGGCGUgGC-CG- -5' |
|||||||
22910 | 3' | -61.4 | NC_005137.2 | + | 114808 | 0.68 | 0.536342 |
Target: 5'- cGCACGUCGUcgUCGUCAGauGUcauaggcgGCUGGCg -3' miRNA: 3'- -UGUGCAGCG--GGCAGUCggCG--------UGGCCG- -5' |
|||||||
22910 | 3' | -61.4 | NC_005137.2 | + | 114167 | 0.68 | 0.52678 |
Target: 5'- aACACGUa-UCgGUUAGugaacCCGCACCGGCu -3' miRNA: 3'- -UGUGCAgcGGgCAGUC-----GGCGUGGCCG- -5' |
|||||||
22910 | 3' | -61.4 | NC_005137.2 | + | 100140 | 0.69 | 0.4985 |
Target: 5'- gGCACaGcUCGCCCacGUaCGGgCGCGCCGGg -3' miRNA: 3'- -UGUG-C-AGCGGG--CA-GUCgGCGUGGCCg -5' |
|||||||
22910 | 3' | -61.4 | NC_005137.2 | + | 98341 | 0.69 | 0.480028 |
Target: 5'- uCAUGUCGUacgucaCCGUCAcGCUuguGCGCCGGUu -3' miRNA: 3'- uGUGCAGCG------GGCAGU-CGG---CGUGGCCG- -5' |
|||||||
22910 | 3' | -61.4 | NC_005137.2 | + | 35549 | 0.69 | 0.461896 |
Target: 5'- aACACGgCGCuuGUCaAGacaCGCaccGCCGGCg -3' miRNA: 3'- -UGUGCaGCGggCAG-UCg--GCG---UGGCCG- -5' |
|||||||
22910 | 3' | -61.4 | NC_005137.2 | + | 123174 | 0.69 | 0.452967 |
Target: 5'- uUAUuUUGCCUGUUuGCCGC-CCGGCa -3' miRNA: 3'- uGUGcAGCGGGCAGuCGGCGuGGCCG- -5' |
|||||||
22910 | 3' | -61.4 | NC_005137.2 | + | 85253 | 0.69 | 0.452967 |
Target: 5'- -gGCGUCGCUguCGUCAGCgGCguaACCcuuGGCg -3' miRNA: 3'- ugUGCAGCGG--GCAGUCGgCG---UGG---CCG- -5' |
|||||||
22910 | 3' | -61.4 | NC_005137.2 | + | 55358 | 0.7 | 0.435394 |
Target: 5'- uGCACGU-GCCCcUUGGCCaCGCUGGCc -3' miRNA: 3'- -UGUGCAgCGGGcAGUCGGcGUGGCCG- -5' |
|||||||
22910 | 3' | -61.4 | NC_005137.2 | + | 27391 | 0.71 | 0.346315 |
Target: 5'- cGCACGcCGUCCGgccaaaaguagCGGCCGCugCaGCg -3' miRNA: 3'- -UGUGCaGCGGGCa----------GUCGGCGugGcCG- -5' |
|||||||
22910 | 3' | -61.4 | NC_005137.2 | + | 18243 | 0.72 | 0.338893 |
Target: 5'- uGCGCGUCGUUCGUacuGCgGCGCCGcGUc -3' miRNA: 3'- -UGUGCAGCGGGCAgu-CGgCGUGGC-CG- -5' |
|||||||
22910 | 3' | -61.4 | NC_005137.2 | + | 31958 | 0.73 | 0.27107 |
Target: 5'- aGCACGuUCGCCaaacugCAGCCGUacacuauaaauuACCGGCg -3' miRNA: 3'- -UGUGC-AGCGGgca---GUCGGCG------------UGGCCG- -5' |
|||||||
22910 | 3' | -61.4 | NC_005137.2 | + | 22452 | 0.81 | 0.083192 |
Target: 5'- gGCaACGUgCGCuCCGUCGGCUGCACCGcGCu -3' miRNA: 3'- -UG-UGCA-GCG-GGCAGUCGGCGUGGC-CG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home