miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22910 3' -61.4 NC_005137.2 + 5976 0.66 0.65412
Target:  5'- gGCucCGUUGCCuCGcCAcGCCGCaaccgaucGCCGGUg -3'
miRNA:   3'- -UGu-GCAGCGG-GCaGU-CGGCG--------UGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 13423 1.11 0.000665
Target:  5'- uACACGUCGCCCGUCAGCCGCACCGGCg -3'
miRNA:   3'- -UGUGCAGCGGGCAGUCGGCGUGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 18243 0.72 0.338893
Target:  5'- uGCGCGUCGUUCGUacuGCgGCGCCGcGUc -3'
miRNA:   3'- -UGUGCAGCGGGCAgu-CGgCGUGGC-CG- -5'
22910 3' -61.4 NC_005137.2 + 18548 0.67 0.584942
Target:  5'- gGCGcCGUCGCCCaUCcugccGCCGCGuccaaCGGCc -3'
miRNA:   3'- -UGU-GCAGCGGGcAGu----CGGCGUg----GCCG- -5'
22910 3' -61.4 NC_005137.2 + 20579 0.66 0.634328
Target:  5'- uGCACGcucaccgucgCGCCCGUU-GCCaGCugCGGa -3'
miRNA:   3'- -UGUGCa---------GCGGGCAGuCGG-CGugGCCg -5'
22910 3' -61.4 NC_005137.2 + 20903 0.67 0.565366
Target:  5'- gGCACGUUGaUCGUUA-CCGCAuCUGGCg -3'
miRNA:   3'- -UGUGCAGCgGGCAGUcGGCGU-GGCCG- -5'
22910 3' -61.4 NC_005137.2 + 22368 0.67 0.61453
Target:  5'- uGCACGUCGgCaggCgAGCacuuuaacccuaCGCACCGGCa -3'
miRNA:   3'- -UGUGCAGCgGgcaG-UCG------------GCGUGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 22380 0.67 0.604646
Target:  5'- uCGCGUgGCaCCGUCA-CCGCcACCaGGUu -3'
miRNA:   3'- uGUGCAgCG-GGCAGUcGGCG-UGG-CCG- -5'
22910 3' -61.4 NC_005137.2 + 22452 0.81 0.083192
Target:  5'- gGCaACGUgCGCuCCGUCGGCUGCACCGcGCu -3'
miRNA:   3'- -UG-UGCA-GCG-GGCAGUCGGCGUGGC-CG- -5'
22910 3' -61.4 NC_005137.2 + 27391 0.71 0.346315
Target:  5'- cGCACGcCGUCCGgccaaaaguagCGGCCGCugCaGCg -3'
miRNA:   3'- -UGUGCaGCGGGCa----------GUCGGCGugGcCG- -5'
22910 3' -61.4 NC_005137.2 + 28752 0.68 0.52678
Target:  5'- uACGCGUCGCCU---GGCa-CACCGGUc -3'
miRNA:   3'- -UGUGCAGCGGGcagUCGgcGUGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 30752 0.67 0.575135
Target:  5'- gACGCG-CGCCCGUgCGuuGCgGCGcCCGGa -3'
miRNA:   3'- -UGUGCaGCGGGCA-GU--CGgCGU-GGCCg -5'
22910 3' -61.4 NC_005137.2 + 30931 0.66 0.667938
Target:  5'- aGCACGUgcgCGCgCCG-CGGCacaaagcaugcugaaCGCGCCGcGCg -3'
miRNA:   3'- -UGUGCA---GCG-GGCaGUCG---------------GCGUGGC-CG- -5'
22910 3' -61.4 NC_005137.2 + 31203 0.67 0.594781
Target:  5'- cCGCGUCGCCCuuGUacCAGCgGUcgCGGCa -3'
miRNA:   3'- uGUGCAGCGGG--CA--GUCGgCGugGCCG- -5'
22910 3' -61.4 NC_005137.2 + 31958 0.73 0.27107
Target:  5'- aGCACGuUCGCCaaacugCAGCCGUacacuauaaauuACCGGCg -3'
miRNA:   3'- -UGUGC-AGCGGgca---GUCGGCG------------UGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 34595 0.69 0.470917
Target:  5'- gGCGCGUCGCCgCGcgggUAGCgGUcgGCgCGGCu -3'
miRNA:   3'- -UGUGCAGCGG-GCa---GUCGgCG--UG-GCCG- -5'
22910 3' -61.4 NC_005137.2 + 35356 0.73 0.27107
Target:  5'- cGCAC-UUGCCCGUCGG-CGCA-CGGCg -3'
miRNA:   3'- -UGUGcAGCGGGCAGUCgGCGUgGCCG- -5'
22910 3' -61.4 NC_005137.2 + 35407 0.66 0.644229
Target:  5'- aGCACGUCGCgCa-CAG-UGCGCgGGCg -3'
miRNA:   3'- -UGUGCAGCGgGcaGUCgGCGUGgCCG- -5'
22910 3' -61.4 NC_005137.2 + 35510 0.7 0.418223
Target:  5'- cCACGUCagcgaugcGCCCGUgCGGCgCGCauccgACCGGUa -3'
miRNA:   3'- uGUGCAG--------CGGGCA-GUCG-GCG-----UGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 35549 0.69 0.461896
Target:  5'- aACACGgCGCuuGUCaAGacaCGCaccGCCGGCg -3'
miRNA:   3'- -UGUGCaGCGggCAG-UCg--GCG---UGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.