Results 21 - 40 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22910 | 3' | -61.4 | NC_005137.2 | + | 37667 | 0.74 | 0.230395 |
Target: 5'- aACGCGUCGCCgGUCAGCacgaugcuaGCGCuCaGCg -3' miRNA: 3'- -UGUGCAGCGGgCAGUCGg--------CGUG-GcCG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 39756 | 0.66 | 0.624427 |
Target: 5'- uGCACGaCGUCCGUCAuauuccCCGgCACgUGGCa -3' miRNA: 3'- -UGUGCaGCGGGCAGUc-----GGC-GUG-GCCG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 42973 | 0.77 | 0.168114 |
Target: 5'- cCACGUgguggccCGCCuCGgcggUGGCCGCGCCGGCa -3' miRNA: 3'- uGUGCA-------GCGG-GCa---GUCGGCGUGGCCG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 47019 | 0.66 | 0.644229 |
Target: 5'- cGCAaucUGUCGCuCCGUCAuggacGCCuGCACC-GCu -3' miRNA: 3'- -UGU---GCAGCG-GGCAGU-----CGG-CGUGGcCG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 47713 | 0.67 | 0.61453 |
Target: 5'- aGCGgGUCGCCCuGUUuGaCCGCGCUGuuuGCa -3' miRNA: 3'- -UGUgCAGCGGG-CAGuC-GGCGUGGC---CG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 49746 | 0.66 | 0.663995 |
Target: 5'- gGCGCGUCGUuuGUUuGCUuuGCCaGCg -3' miRNA: 3'- -UGUGCAGCGggCAGuCGGcgUGGcCG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 51334 | 0.69 | 0.470917 |
Target: 5'- -gGgGUCGUCCG-CcGCCGCGCCuGCa -3' miRNA: 3'- ugUgCAGCGGGCaGuCGGCGUGGcCG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 55358 | 0.7 | 0.435394 |
Target: 5'- uGCACGU-GCCCcUUGGCCaCGCUGGCc -3' miRNA: 3'- -UGUGCAgCGGGcAGUCGGcGUGGCCG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 61697 | 0.66 | 0.666953 |
Target: 5'- cGCAUGUCGUCCGUUugcacgaucauaaAauuacgccuaaacgcGCCGCgACCGcGCa -3' miRNA: 3'- -UGUGCAGCGGGCAG-------------U---------------CGGCG-UGGC-CG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 66195 | 0.67 | 0.575135 |
Target: 5'- aACGcCGUCGCCCGauUCGGU-GCACauguuGGCg -3' miRNA: 3'- -UGU-GCAGCGGGC--AGUCGgCGUGg----CCG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 67367 | 0.73 | 0.27107 |
Target: 5'- gACGCGaugCGCgaCCGUC-GCCGCGgCGGCg -3' miRNA: 3'- -UGUGCa--GCG--GGCAGuCGGCGUgGCCG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 67739 | 0.66 | 0.663995 |
Target: 5'- gACGCGUuugaauaaUGUCCGa-AGCgCGCACCGGg -3' miRNA: 3'- -UGUGCA--------GCGGGCagUCG-GCGUGGCCg -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 67983 | 0.66 | 0.624427 |
Target: 5'- cGCACGUCG-UCGUUGGCCaCGCgCGaGCa -3' miRNA: 3'- -UGUGCAGCgGGCAGUCGGcGUG-GC-CG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 69606 | 0.7 | 0.413152 |
Target: 5'- aACGCGgCGUuucuuaCGUCGGCCGCcaacgccaucaacucGCCGGCc -3' miRNA: 3'- -UGUGCaGCGg-----GCAGUCGGCG---------------UGGCCG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 74418 | 0.77 | 0.168526 |
Target: 5'- aGCACGUCGCCCGUCGcGUCGgGucccauaaCGGCg -3' miRNA: 3'- -UGUGCAGCGGGCAGU-CGGCgUg-------GCCG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 75970 | 0.66 | 0.65412 |
Target: 5'- gACGCGgCGCgCGUUGGUgcacggCGCACgGGCc -3' miRNA: 3'- -UGUGCaGCGgGCAGUCG------GCGUGgCCG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 85253 | 0.69 | 0.452967 |
Target: 5'- -gGCGUCGCUguCGUCAGCgGCguaACCcuuGGCg -3' miRNA: 3'- ugUGCAGCGG--GCAGUCGgCG---UGG---CCG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 85978 | 0.74 | 0.235874 |
Target: 5'- -gACGg-GCCCGUaaagauauuugUGGCCGCGCCGGCc -3' miRNA: 3'- ugUGCagCGGGCA-----------GUCGGCGUGGCCG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 87213 | 0.66 | 0.634328 |
Target: 5'- uGC-CGUCGCUgaaaGUCGGCaaacccgcuggCGCGCUGGUa -3' miRNA: 3'- -UGuGCAGCGGg---CAGUCG-----------GCGUGGCCG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 88505 | 0.66 | 0.673846 |
Target: 5'- -aAUGUCGCCgCG-CAGCaaGCGCCGuGUg -3' miRNA: 3'- ugUGCAGCGG-GCaGUCGg-CGUGGC-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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