miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22910 3' -61.4 NC_005137.2 + 119740 0.66 0.634328
Target:  5'- aGCGCGUaGCggaCGUCAG-CGCGCUGGa -3'
miRNA:   3'- -UGUGCAgCGg--GCAGUCgGCGUGGCCg -5'
22910 3' -61.4 NC_005137.2 + 47713 0.67 0.61453
Target:  5'- aGCGgGUCGCCCuGUUuGaCCGCGCUGuuuGCa -3'
miRNA:   3'- -UGUgCAGCGGG-CAGuC-GGCGUGGC---CG- -5'
22910 3' -61.4 NC_005137.2 + 18548 0.67 0.584942
Target:  5'- gGCGcCGUCGCCCaUCcugccGCCGCGuccaaCGGCc -3'
miRNA:   3'- -UGU-GCAGCGGGcAGu----CGGCGUg----GCCG- -5'
22910 3' -61.4 NC_005137.2 + 30752 0.67 0.575135
Target:  5'- gACGCG-CGCCCGUgCGuuGCgGCGcCCGGa -3'
miRNA:   3'- -UGUGCaGCGGGCA-GU--CGgCGU-GGCCg -5'
22910 3' -61.4 NC_005137.2 + 66195 0.67 0.575135
Target:  5'- aACGcCGUCGCCCGauUCGGU-GCACauguuGGCg -3'
miRNA:   3'- -UGU-GCAGCGGGC--AGUCGgCGUGg----CCG- -5'
22910 3' -61.4 NC_005137.2 + 98098 0.67 0.565366
Target:  5'- uGCAUGUUGCgaguuUUGUCA-CCGcCGCCGGCu -3'
miRNA:   3'- -UGUGCAGCG-----GGCAGUcGGC-GUGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 22380 0.67 0.604646
Target:  5'- uCGCGUgGCaCCGUCA-CCGCcACCaGGUu -3'
miRNA:   3'- uGUGCAgCG-GGCAGUcGGCG-UGG-CCG- -5'
22910 3' -61.4 NC_005137.2 + 22368 0.67 0.61453
Target:  5'- uGCACGUCGgCaggCgAGCacuuuaacccuaCGCACCGGCa -3'
miRNA:   3'- -UGUGCAGCgGgcaG-UCG------------GCGUGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 31203 0.67 0.594781
Target:  5'- cCGCGUCGCCCuuGUacCAGCgGUcgCGGCa -3'
miRNA:   3'- uGUGCAGCGGG--CA--GUCGgCGugGCCG- -5'
22910 3' -61.4 NC_005137.2 + 20903 0.67 0.565366
Target:  5'- gGCACGUUGaUCGUUA-CCGCAuCUGGCg -3'
miRNA:   3'- -UGUGCAGCgGGCAGUcGGCGU-GGCCG- -5'
22910 3' -61.4 NC_005137.2 + 114167 0.68 0.52678
Target:  5'- aACACGUa-UCgGUUAGugaacCCGCACCGGCu -3'
miRNA:   3'- -UGUGCAgcGGgCAGUC-----GGCGUGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 124980 0.68 0.559525
Target:  5'- gGCGCuG-CGCUgCGUUGgaaaucgggcgggauGCCGCACCGGCg -3'
miRNA:   3'- -UGUG-CaGCGG-GCAGU---------------CGGCGUGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 123047 0.68 0.545964
Target:  5'- aACACGggcCGCCgGUCgaGGUCGCGgCGcGCa -3'
miRNA:   3'- -UGUGCa--GCGGgCAG--UCGGCGUgGC-CG- -5'
22910 3' -61.4 NC_005137.2 + 28752 0.68 0.52678
Target:  5'- uACGCGUCGCCU---GGCa-CACCGGUc -3'
miRNA:   3'- -UGUGCAGCGGGcagUCGgcGUGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 114808 0.68 0.536342
Target:  5'- cGCACGUCGUcgUCGUCAGauGUcauaggcgGCUGGCg -3'
miRNA:   3'- -UGUGCAGCG--GGCAGUCggCG--------UGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 85253 0.69 0.452967
Target:  5'- -gGCGUCGCUguCGUCAGCgGCguaACCcuuGGCg -3'
miRNA:   3'- ugUGCAGCGG--GCAGUCGgCG---UGG---CCG- -5'
22910 3' -61.4 NC_005137.2 + 100140 0.69 0.4985
Target:  5'- gGCACaGcUCGCCCacGUaCGGgCGCGCCGGg -3'
miRNA:   3'- -UGUG-C-AGCGGG--CA-GUCgGCGUGGCCg -5'
22910 3' -61.4 NC_005137.2 + 123174 0.69 0.452967
Target:  5'- uUAUuUUGCCUGUUuGCCGC-CCGGCa -3'
miRNA:   3'- uGUGcAGCGGGCAGuCGGCGuGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 98341 0.69 0.480028
Target:  5'- uCAUGUCGUacgucaCCGUCAcGCUuguGCGCCGGUu -3'
miRNA:   3'- uGUGCAGCG------GGCAGU-CGG---CGUGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 35549 0.69 0.461896
Target:  5'- aACACGgCGCuuGUCaAGacaCGCaccGCCGGCg -3'
miRNA:   3'- -UGUGCaGCGggCAG-UCg--GCG---UGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.