miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22910 3' -61.4 NC_005137.2 + 27391 0.71 0.346315
Target:  5'- cGCACGcCGUCCGgccaaaaguagCGGCCGCugCaGCg -3'
miRNA:   3'- -UGUGCaGCGGGCa----------GUCGGCGugGcCG- -5'
22910 3' -61.4 NC_005137.2 + 55358 0.7 0.435394
Target:  5'- uGCACGU-GCCCcUUGGCCaCGCUGGCc -3'
miRNA:   3'- -UGUGCAgCGGGcAGUCGGcGUGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 85253 0.69 0.452967
Target:  5'- -gGCGUCGCUguCGUCAGCgGCguaACCcuuGGCg -3'
miRNA:   3'- ugUGCAGCGG--GCAGUCGgCG---UGG---CCG- -5'
22910 3' -61.4 NC_005137.2 + 123174 0.69 0.452967
Target:  5'- uUAUuUUGCCUGUUuGCCGC-CCGGCa -3'
miRNA:   3'- uGUGcAGCGGGCAGuCGGCGuGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 123047 0.68 0.545964
Target:  5'- aACACGggcCGCCgGUCgaGGUCGCGgCGcGCa -3'
miRNA:   3'- -UGUGCa--GCGGgCAG--UCGGCGUgGC-CG- -5'
22910 3' -61.4 NC_005137.2 + 114808 0.68 0.536342
Target:  5'- cGCACGUCGUcgUCGUCAGauGUcauaggcgGCUGGCg -3'
miRNA:   3'- -UGUGCAGCG--GGCAGUCggCG--------UGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 114167 0.68 0.52678
Target:  5'- aACACGUa-UCgGUUAGugaacCCGCACCGGCu -3'
miRNA:   3'- -UGUGCAgcGGgCAGUC-----GGCGUGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 100140 0.69 0.4985
Target:  5'- gGCACaGcUCGCCCacGUaCGGgCGCGCCGGg -3'
miRNA:   3'- -UGUG-C-AGCGGG--CA-GUCgGCGUGGCCg -5'
22910 3' -61.4 NC_005137.2 + 98341 0.69 0.480028
Target:  5'- uCAUGUCGUacgucaCCGUCAcGCUuguGCGCCGGUu -3'
miRNA:   3'- uGUGCAGCG------GGCAGU-CGG---CGUGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 35549 0.69 0.461896
Target:  5'- aACACGgCGCuuGUCaAGacaCGCaccGCCGGCg -3'
miRNA:   3'- -UGUGCaGCGggCAG-UCg--GCG---UGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 126713 0.66 0.624427
Target:  5'- uGCACGcaCGgCC-UUAaCCGCACCGGCu -3'
miRNA:   3'- -UGUGCa-GCgGGcAGUcGGCGUGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 112209 0.66 0.624427
Target:  5'- uCugGUCGCgCG-CAGCCG-ACUuGGCg -3'
miRNA:   3'- uGugCAGCGgGCaGUCGGCgUGG-CCG- -5'
22910 3' -61.4 NC_005137.2 + 20579 0.66 0.634328
Target:  5'- uGCACGcucaccgucgCGCCCGUU-GCCaGCugCGGa -3'
miRNA:   3'- -UGUGCa---------GCGGGCAGuCGG-CGugGCCg -5'
22910 3' -61.4 NC_005137.2 + 87213 0.66 0.634328
Target:  5'- uGC-CGUCGCUgaaaGUCGGCaaacccgcuggCGCGCUGGUa -3'
miRNA:   3'- -UGuGCAGCGGg---CAGUCG-----------GCGUGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 119740 0.66 0.634328
Target:  5'- aGCGCGUaGCggaCGUCAG-CGCGCUGGa -3'
miRNA:   3'- -UGUGCAgCGg--GCAGUCgGCGUGGCCg -5'
22910 3' -61.4 NC_005137.2 + 35407 0.66 0.644229
Target:  5'- aGCACGUCGCgCa-CAG-UGCGCgGGCg -3'
miRNA:   3'- -UGUGCAGCGgGcaGUCgGCGUGgCCG- -5'
22910 3' -61.4 NC_005137.2 + 5976 0.66 0.65412
Target:  5'- gGCucCGUUGCCuCGcCAcGCCGCaaccgaucGCCGGUg -3'
miRNA:   3'- -UGu-GCAGCGG-GCaGU-CGGCG--------UGGCCG- -5'
22910 3' -61.4 NC_005137.2 + 129504 0.66 0.663995
Target:  5'- aACGCGUCgGCgCCGcgCGGCggaaUGUACCGGa -3'
miRNA:   3'- -UGUGCAG-CG-GGCa-GUCG----GCGUGGCCg -5'
22910 3' -61.4 NC_005137.2 + 61697 0.66 0.666953
Target:  5'- cGCAUGUCGUCCGUUugcacgaucauaaAauuacgccuaaacgcGCCGCgACCGcGCa -3'
miRNA:   3'- -UGUGCAGCGGGCAG-------------U---------------CGGCG-UGGC-CG- -5'
22910 3' -61.4 NC_005137.2 + 13423 1.11 0.000665
Target:  5'- uACACGUCGCCCGUCAGCCGCACCGGCg -3'
miRNA:   3'- -UGUGCAGCGGGCAGUCGGCGUGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.