Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22910 | 3' | -61.4 | NC_005137.2 | + | 28752 | 0.68 | 0.52678 |
Target: 5'- uACGCGUCGCCU---GGCa-CACCGGUc -3' miRNA: 3'- -UGUGCAGCGGGcagUCGgcGUGGCCG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 30931 | 0.66 | 0.667938 |
Target: 5'- aGCACGUgcgCGCgCCG-CGGCacaaagcaugcugaaCGCGCCGcGCg -3' miRNA: 3'- -UGUGCA---GCG-GGCaGUCG---------------GCGUGGC-CG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 61697 | 0.66 | 0.666953 |
Target: 5'- cGCAUGUCGUCCGUUugcacgaucauaaAauuacgccuaaacgcGCCGCgACCGcGCa -3' miRNA: 3'- -UGUGCAGCGGGCAG-------------U---------------CGGCG-UGGC-CG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 126713 | 0.66 | 0.624427 |
Target: 5'- uGCACGcaCGgCC-UUAaCCGCACCGGCu -3' miRNA: 3'- -UGUGCa-GCgGGcAGUcGGCGUGGCCG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 22380 | 0.67 | 0.604646 |
Target: 5'- uCGCGUgGCaCCGUCA-CCGCcACCaGGUu -3' miRNA: 3'- uGUGCAgCG-GGCAGUcGGCG-UGG-CCG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 129504 | 0.66 | 0.663995 |
Target: 5'- aACGCGUCgGCgCCGcgCGGCggaaUGUACCGGa -3' miRNA: 3'- -UGUGCAG-CG-GGCa-GUCG----GCGUGGCCg -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 87213 | 0.66 | 0.634328 |
Target: 5'- uGC-CGUCGCUgaaaGUCGGCaaacccgcuggCGCGCUGGUa -3' miRNA: 3'- -UGuGCAGCGGg---CAGUCG-----------GCGUGGCCG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 112209 | 0.66 | 0.624427 |
Target: 5'- uCugGUCGCgCG-CAGCCG-ACUuGGCg -3' miRNA: 3'- uGugCAGCGgGCaGUCGGCgUGG-CCG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 98098 | 0.67 | 0.565366 |
Target: 5'- uGCAUGUUGCgaguuUUGUCA-CCGcCGCCGGCu -3' miRNA: 3'- -UGUGCAGCG-----GGCAGUcGGC-GUGGCCG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 120779 | 0.69 | 0.470917 |
Target: 5'- aACGCGUacaccaGCuuGUgaCAGCCcaGCGCCGGUc -3' miRNA: 3'- -UGUGCAg-----CGggCA--GUCGG--CGUGGCCG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 13423 | 1.11 | 0.000665 |
Target: 5'- uACACGUCGCCCGUCAGCCGCACCGGCg -3' miRNA: 3'- -UGUGCAGCGGGCAGUCGGCGUGGCCG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 35407 | 0.66 | 0.644229 |
Target: 5'- aGCACGUCGCgCa-CAG-UGCGCgGGCg -3' miRNA: 3'- -UGUGCAGCGgGcaGUCgGCGUGgCCG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 5976 | 0.66 | 0.65412 |
Target: 5'- gGCucCGUUGCCuCGcCAcGCCGCaaccgaucGCCGGUg -3' miRNA: 3'- -UGu-GCAGCGG-GCaGU-CGGCG--------UGGCCG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 30752 | 0.67 | 0.575135 |
Target: 5'- gACGCG-CGCCCGUgCGuuGCgGCGcCCGGa -3' miRNA: 3'- -UGUGCaGCGGGCA-GU--CGgCGU-GGCCg -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 66195 | 0.67 | 0.575135 |
Target: 5'- aACGcCGUCGCCCGauUCGGU-GCACauguuGGCg -3' miRNA: 3'- -UGU-GCAGCGGGC--AGUCGgCGUGg----CCG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 119740 | 0.66 | 0.634328 |
Target: 5'- aGCGCGUaGCggaCGUCAG-CGCGCUGGa -3' miRNA: 3'- -UGUGCAgCGg--GCAGUCgGCGUGGCCg -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 34595 | 0.69 | 0.470917 |
Target: 5'- gGCGCGUCGCCgCGcgggUAGCgGUcgGCgCGGCu -3' miRNA: 3'- -UGUGCAGCGG-GCa---GUCGgCG--UG-GCCG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 51334 | 0.69 | 0.470917 |
Target: 5'- -gGgGUCGUCCG-CcGCCGCGCCuGCa -3' miRNA: 3'- ugUgCAGCGGGCaGuCGGCGUGGcCG- -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 20579 | 0.66 | 0.634328 |
Target: 5'- uGCACGcucaccgucgCGCCCGUU-GCCaGCugCGGa -3' miRNA: 3'- -UGUGCa---------GCGGGCAGuCGG-CGugGCCg -5' |
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22910 | 3' | -61.4 | NC_005137.2 | + | 18548 | 0.67 | 0.584942 |
Target: 5'- gGCGcCGUCGCCCaUCcugccGCCGCGuccaaCGGCc -3' miRNA: 3'- -UGU-GCAGCGGGcAGu----CGGCGUg----GCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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