miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22911 3' -49.8 NC_005137.2 + 110572 0.66 0.997138
Target:  5'- cGCAccUGCGucuugGCGCGCCcAUccUGUGCg -3'
miRNA:   3'- -CGUuaACGC-----UGCGCGGcUAuuGCACG- -5'
22911 3' -49.8 NC_005137.2 + 22405 0.66 0.997138
Target:  5'- gGCAAca-UGGCGCGCC--UGACGcUGCg -3'
miRNA:   3'- -CGUUaacGCUGCGCGGcuAUUGC-ACG- -5'
22911 3' -49.8 NC_005137.2 + 24270 0.66 0.997138
Target:  5'- uGCAaaAUUGCacuguaacgaacGGCGCGCUGAcaGACG-GCu -3'
miRNA:   3'- -CGU--UAACG------------CUGCGCGGCUa-UUGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 86872 0.66 0.997138
Target:  5'- -gAAUUGCGAuCGCaCCGuu-GCgGUGCg -3'
miRNA:   3'- cgUUAACGCU-GCGcGGCuauUG-CACG- -5'
22911 3' -49.8 NC_005137.2 + 74281 0.66 0.997138
Target:  5'- uGCAAccGUGcCGUGCCGGcGcgaaagccaacACGUGCa -3'
miRNA:   3'- -CGUUaaCGCuGCGCGGCUaU-----------UGCACG- -5'
22911 3' -49.8 NC_005137.2 + 129007 0.66 0.997138
Target:  5'- aCAAUUGUGcaACGCGCUaaAUGACcUGCa -3'
miRNA:   3'- cGUUAACGC--UGCGCGGc-UAUUGcACG- -5'
22911 3' -49.8 NC_005137.2 + 110710 0.66 0.997138
Target:  5'- cGCGcgUGCGcaacgguguGCGCGCaGAgcgcuUGUGCg -3'
miRNA:   3'- -CGUuaACGC---------UGCGCGgCUauu--GCACG- -5'
22911 3' -49.8 NC_005137.2 + 110619 0.66 0.997138
Target:  5'- gGCGGUUagugaccccGUGuACGCGCCGGccGCGgugUGCa -3'
miRNA:   3'- -CGUUAA---------CGC-UGCGCGGCUauUGC---ACG- -5'
22911 3' -49.8 NC_005137.2 + 44007 0.66 0.997138
Target:  5'- cGCGAUccGCGGCGUuUCGc--ACGUGCa -3'
miRNA:   3'- -CGUUAa-CGCUGCGcGGCuauUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 81424 0.66 0.997089
Target:  5'- aGCu-UUGauGCGCaGCCcagcacuGAUAACGUGCa -3'
miRNA:   3'- -CGuuAACgcUGCG-CGG-------CUAUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 110630 0.66 0.996615
Target:  5'- gGCcg-UGCacaaACGCGCCGAcGGCGUuugGCu -3'
miRNA:   3'- -CGuuaACGc---UGCGCGGCUaUUGCA---CG- -5'
22911 3' -49.8 NC_005137.2 + 108149 0.66 0.996615
Target:  5'- uCGGgcgGCGGCgGCGUCGGUAuGCGcGCg -3'
miRNA:   3'- cGUUaa-CGCUG-CGCGGCUAU-UGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 43931 0.66 0.996615
Target:  5'- gGCAAacccGCuGGCGCGCUGGUAguaGCGUucguugGCg -3'
miRNA:   3'- -CGUUaa--CG-CUGCGCGGCUAU---UGCA------CG- -5'
22911 3' -49.8 NC_005137.2 + 42586 0.66 0.996615
Target:  5'- -uGAUUGCG-CGCGgCGGacacaUnACGUGUc -3'
miRNA:   3'- cgUUAACGCuGCGCgGCU-----AuUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 103806 0.66 0.996615
Target:  5'- aGCAGUUgcuggugugcgGCGGCGgGuuGGUGcACG-GCa -3'
miRNA:   3'- -CGUUAA-----------CGCUGCgCggCUAU-UGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 119535 0.66 0.996015
Target:  5'- cGCAAUccGCuGACGUGUCGAguGCGUuuaGCc -3'
miRNA:   3'- -CGUUAa-CG-CUGCGCGGCUauUGCA---CG- -5'
22911 3' -49.8 NC_005137.2 + 110310 0.66 0.996015
Target:  5'- gGCGAUcGUGACGUGUUuGUGcGCGUGUu -3'
miRNA:   3'- -CGUUAaCGCUGCGCGGcUAU-UGCACG- -5'
22911 3' -49.8 NC_005137.2 + 84731 0.66 0.996015
Target:  5'- aGCAcgUGCccgacccgcccGaACGCGCCGA---CGUGUu -3'
miRNA:   3'- -CGUuaACG-----------C-UGCGCGGCUauuGCACG- -5'
22911 3' -49.8 NC_005137.2 + 26795 0.66 0.996015
Target:  5'- cGCGc-UGCGACGCGCaCGcuuguACGaGCg -3'
miRNA:   3'- -CGUuaACGCUGCGCG-GCuau--UGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 41963 0.66 0.996015
Target:  5'- -----cGUGGCGCGCCG-UGACa-GCg -3'
miRNA:   3'- cguuaaCGCUGCGCGGCuAUUGcaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.