miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22911 3' -49.8 NC_005137.2 + 122535 0.66 0.996015
Target:  5'- cGCuaagGCGGCGgGCgug-GGCGUGCu -3'
miRNA:   3'- -CGuuaaCGCUGCgCGgcuaUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 123102 0.66 0.99595
Target:  5'- gGCAAaUGCGcaauggaGCuGCGCCGG---UGUGCa -3'
miRNA:   3'- -CGUUaACGC-------UG-CGCGGCUauuGCACG- -5'
22911 3' -49.8 NC_005137.2 + 46881 0.66 0.99595
Target:  5'- gGCuggugGUGGCGCGCguggaaacgguguCGAUGuccguugcgcGCGUGCg -3'
miRNA:   3'- -CGuuaa-CGCUGCGCG-------------GCUAU----------UGCACG- -5'
22911 3' -49.8 NC_005137.2 + 129204 0.66 0.99595
Target:  5'- -----cGCGcACaauuuuaGCGCCGAugaaguUAACGUGCa -3'
miRNA:   3'- cguuaaCGC-UG-------CGCGGCU------AUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 46321 0.66 0.995885
Target:  5'- cGCAcUUGuUGAUGCGCaCGuccgacacuuGCGUGCu -3'
miRNA:   3'- -CGUuAAC-GCUGCGCG-GCuau-------UGCACG- -5'
22911 3' -49.8 NC_005137.2 + 70336 0.66 0.995331
Target:  5'- gGCGucgGCGAagGCGUCGGUGAagGUGUu -3'
miRNA:   3'- -CGUuaaCGCUg-CGCGGCUAUUg-CACG- -5'
22911 3' -49.8 NC_005137.2 + 106204 0.66 0.995331
Target:  5'- cGCAcgUGgGACGCGgUCGccaagAACGgGCa -3'
miRNA:   3'- -CGUuaACgCUGCGC-GGCua---UUGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 81796 0.66 0.995331
Target:  5'- aGUuuUUGCGucGCGCGUCGcGUaucGAUGUGCc -3'
miRNA:   3'- -CGuuAACGC--UGCGCGGC-UA---UUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 56889 0.66 0.995331
Target:  5'- cCAAUUGCGuuuCGCGCaUGAUAAgagGCg -3'
miRNA:   3'- cGUUAACGCu--GCGCG-GCUAUUgcaCG- -5'
22911 3' -49.8 NC_005137.2 + 90907 0.66 0.995331
Target:  5'- aGCAcGUUGCGcGCGUGCuCGAUcauGAUGaGCa -3'
miRNA:   3'- -CGU-UAACGC-UGCGCG-GCUA---UUGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 111343 0.66 0.994554
Target:  5'- -aGGUUGUcguaGAUGCuGCUGGUAGCGgGCg -3'
miRNA:   3'- cgUUAACG----CUGCG-CGGCUAUUGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 67932 0.66 0.994554
Target:  5'- aGCAAga-CGACGUGuuGGUGAgCG-GCg -3'
miRNA:   3'- -CGUUaacGCUGCGCggCUAUU-GCaCG- -5'
22911 3' -49.8 NC_005137.2 + 102745 0.66 0.994554
Target:  5'- aGCAcgUa-GACGaCG-CGGUGGCGUGCg -3'
miRNA:   3'- -CGUuaAcgCUGC-GCgGCUAUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 13068 0.66 0.994554
Target:  5'- cGCGuUUGCGAaaCGCGCCcg-AACuUGCc -3'
miRNA:   3'- -CGUuAACGCU--GCGCGGcuaUUGcACG- -5'
22911 3' -49.8 NC_005137.2 + 4445 0.66 0.994554
Target:  5'- cGCGuc-GCGcaccuuCGCGCCGucguaauaacGUAACGUGUu -3'
miRNA:   3'- -CGUuaaCGCu-----GCGCGGC----------UAUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 51908 0.66 0.994554
Target:  5'- aGCGGUUGCGACaCGUgGAaaauAUGUGa -3'
miRNA:   3'- -CGUUAACGCUGcGCGgCUau--UGCACg -5'
22911 3' -49.8 NC_005137.2 + 15856 0.66 0.994554
Target:  5'- aGCAAguuaaaCGACagugcCGCCGGUcACGUGCc -3'
miRNA:   3'- -CGUUaac---GCUGc----GCGGCUAuUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 122148 0.67 0.993676
Target:  5'- uGUAGUUGUGcCGUGUCGuUGAUGaGCg -3'
miRNA:   3'- -CGUUAACGCuGCGCGGCuAUUGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 26680 0.67 0.993676
Target:  5'- cGCAcgUGCGAacguuugaugGCGCUGA--ACGgcgGCg -3'
miRNA:   3'- -CGUuaACGCUg---------CGCGGCUauUGCa--CG- -5'
22911 3' -49.8 NC_005137.2 + 15510 0.67 0.993676
Target:  5'- gGCGGUUGUGACGUuaUaGUAcCGUGUg -3'
miRNA:   3'- -CGUUAACGCUGCGcgGcUAUuGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.