Results 1 - 20 of 137 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22911 | 3' | -49.8 | NC_005137.2 | + | 110572 | 0.66 | 0.997138 |
Target: 5'- cGCAccUGCGucuugGCGCGCCcAUccUGUGCg -3' miRNA: 3'- -CGUuaACGC-----UGCGCGGcUAuuGCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 74281 | 0.66 | 0.997138 |
Target: 5'- uGCAAccGUGcCGUGCCGGcGcgaaagccaacACGUGCa -3' miRNA: 3'- -CGUUaaCGCuGCGCGGCUaU-----------UGCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 110630 | 0.66 | 0.996615 |
Target: 5'- gGCcg-UGCacaaACGCGCCGAcGGCGUuugGCu -3' miRNA: 3'- -CGuuaACGc---UGCGCGGCUaUUGCA---CG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 123102 | 0.66 | 0.99595 |
Target: 5'- gGCAAaUGCGcaauggaGCuGCGCCGG---UGUGCa -3' miRNA: 3'- -CGUUaACGC-------UG-CGCGGCUauuGCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 119535 | 0.66 | 0.996015 |
Target: 5'- cGCAAUccGCuGACGUGUCGAguGCGUuuaGCc -3' miRNA: 3'- -CGUUAa-CG-CUGCGCGGCUauUGCA---CG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 103806 | 0.66 | 0.996615 |
Target: 5'- aGCAGUUgcuggugugcgGCGGCGgGuuGGUGcACG-GCa -3' miRNA: 3'- -CGUUAA-----------CGCUGCgCggCUAU-UGCaCG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 110619 | 0.66 | 0.997138 |
Target: 5'- gGCGGUUagugaccccGUGuACGCGCCGGccGCGgugUGCa -3' miRNA: 3'- -CGUUAA---------CGC-UGCGCGGCUauUGC---ACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 24270 | 0.66 | 0.997138 |
Target: 5'- uGCAaaAUUGCacuguaacgaacGGCGCGCUGAcaGACG-GCu -3' miRNA: 3'- -CGU--UAACG------------CUGCGCGGCUa-UUGCaCG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 86872 | 0.66 | 0.997138 |
Target: 5'- -gAAUUGCGAuCGCaCCGuu-GCgGUGCg -3' miRNA: 3'- cgUUAACGCU-GCGcGGCuauUG-CACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 70336 | 0.66 | 0.995331 |
Target: 5'- gGCGucgGCGAagGCGUCGGUGAagGUGUu -3' miRNA: 3'- -CGUuaaCGCUg-CGCGGCUAUUg-CACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 81796 | 0.66 | 0.995331 |
Target: 5'- aGUuuUUGCGucGCGCGUCGcGUaucGAUGUGCc -3' miRNA: 3'- -CGuuAACGC--UGCGCGGC-UA---UUGCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 108149 | 0.66 | 0.996615 |
Target: 5'- uCGGgcgGCGGCgGCGUCGGUAuGCGcGCg -3' miRNA: 3'- cGUUaa-CGCUG-CGCGGCUAU-UGCaCG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 22405 | 0.66 | 0.997138 |
Target: 5'- gGCAAca-UGGCGCGCC--UGACGcUGCg -3' miRNA: 3'- -CGUUaacGCUGCGCGGcuAUUGC-ACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 110310 | 0.66 | 0.996015 |
Target: 5'- gGCGAUcGUGACGUGUUuGUGcGCGUGUu -3' miRNA: 3'- -CGUUAaCGCUGCGCGGcUAU-UGCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 13068 | 0.66 | 0.994554 |
Target: 5'- cGCGuUUGCGAaaCGCGCCcg-AACuUGCc -3' miRNA: 3'- -CGUuAACGCU--GCGCGGcuaUUGcACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 110710 | 0.66 | 0.997138 |
Target: 5'- cGCGcgUGCGcaacgguguGCGCGCaGAgcgcuUGUGCg -3' miRNA: 3'- -CGUuaACGC---------UGCGCGgCUauu--GCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 106204 | 0.66 | 0.995331 |
Target: 5'- cGCAcgUGgGACGCGgUCGccaagAACGgGCa -3' miRNA: 3'- -CGUuaACgCUGCGC-GGCua---UUGCaCG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 4445 | 0.66 | 0.994554 |
Target: 5'- cGCGuc-GCGcaccuuCGCGCCGucguaauaacGUAACGUGUu -3' miRNA: 3'- -CGUuaaCGCu-----GCGCGGC----------UAUUGCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 51908 | 0.66 | 0.994554 |
Target: 5'- aGCGGUUGCGACaCGUgGAaaauAUGUGa -3' miRNA: 3'- -CGUUAACGCUGcGCGgCUau--UGCACg -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 44007 | 0.66 | 0.997138 |
Target: 5'- cGCGAUccGCGGCGUuUCGc--ACGUGCa -3' miRNA: 3'- -CGUUAa-CGCUGCGcGGCuauUGCACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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