miRNA display CGI


Results 61 - 80 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22911 3' -49.8 NC_005137.2 + 63789 0.7 0.96174
Target:  5'- cGCAacguggucgaaguGUUGCGAUGCGgaGuaaacGACGUGCg -3'
miRNA:   3'- -CGU-------------UAACGCUGCGCggCua---UUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 64772 0.67 0.992688
Target:  5'- cGCAAUUGUauGACGUGuuGAacgcUAGCcgcgccaacauGUGCa -3'
miRNA:   3'- -CGUUAACG--CUGCGCggCU----AUUG-----------CACG- -5'
22911 3' -49.8 NC_005137.2 + 67932 0.66 0.994554
Target:  5'- aGCAAga-CGACGUGuuGGUGAgCG-GCg -3'
miRNA:   3'- -CGUUaacGCUGCGCggCUAUU-GCaCG- -5'
22911 3' -49.8 NC_005137.2 + 68445 0.69 0.974695
Target:  5'- cGCAAUUGCGAaaguauccUGUGUCGA---CGUGUc -3'
miRNA:   3'- -CGUUAACGCU--------GCGCGGCUauuGCACG- -5'
22911 3' -49.8 NC_005137.2 + 69279 0.7 0.959894
Target:  5'- cGCGGUcGCGGCGCGUuuaggcguaauuuuaUGAU--CGUGCa -3'
miRNA:   3'- -CGUUAaCGCUGCGCG---------------GCUAuuGCACG- -5'
22911 3' -49.8 NC_005137.2 + 70336 0.66 0.995331
Target:  5'- gGCGucgGCGAagGCGUCGGUGAagGUGUu -3'
miRNA:   3'- -CGUuaaCGCUg-CGCGGCUAUUg-CACG- -5'
22911 3' -49.8 NC_005137.2 + 70695 0.67 0.988971
Target:  5'- uCGGcgGUGGCGCuGCCGAguUAACG-GCu -3'
miRNA:   3'- cGUUaaCGCUGCG-CGGCU--AUUGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 71356 0.72 0.89378
Target:  5'- aGCAAUUuguacaacaGCGGCGUGCCGuugcaaaaaGUGGCGcGCu -3'
miRNA:   3'- -CGUUAA---------CGCUGCGCGGC---------UAUUGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 72338 0.73 0.856109
Target:  5'- cGCgAAUUGCGcgaGCuGCGCCGcuccGCGUGCa -3'
miRNA:   3'- -CG-UUAACGC---UG-CGCGGCuau-UGCACG- -5'
22911 3' -49.8 NC_005137.2 + 73429 0.7 0.95018
Target:  5'- ---cUUGCGGCGCGCUGGgcucGACGcGUu -3'
miRNA:   3'- cguuAACGCUGCGCGGCUa---UUGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 74281 0.66 0.997138
Target:  5'- uGCAAccGUGcCGUGCCGGcGcgaaagccaacACGUGCa -3'
miRNA:   3'- -CGUUaaCGCuGCGCGGCUaU-----------UGCACG- -5'
22911 3' -49.8 NC_005137.2 + 76190 0.67 0.989398
Target:  5'- gGUAAUUGCguuuuugGugGCGCuuuuuauguacguugCGGUAGCGcUGCg -3'
miRNA:   3'- -CGUUAACG-------CugCGCG---------------GCUAUUGC-ACG- -5'
22911 3' -49.8 NC_005137.2 + 79736 0.75 0.765273
Target:  5'- cGCaAAUUGCGACGCaaugGCCGcguUAGCGUugGCg -3'
miRNA:   3'- -CG-UUAACGCUGCG----CGGCu--AUUGCA--CG- -5'
22911 3' -49.8 NC_005137.2 + 81267 0.72 0.886727
Target:  5'- aGCAAacaaaCGACGCGCCGAUGAa--GCg -3'
miRNA:   3'- -CGUUaac--GCUGCGCGGCUAUUgcaCG- -5'
22911 3' -49.8 NC_005137.2 + 81388 0.67 0.991581
Target:  5'- gGCAAcgGCGAcCGCauuCCGu--ACGUGCu -3'
miRNA:   3'- -CGUUaaCGCU-GCGc--GGCuauUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 81424 0.66 0.997089
Target:  5'- aGCu-UUGauGCGCaGCCcagcacuGAUAACGUGCa -3'
miRNA:   3'- -CGuuAACgcUGCG-CGG-------CUAUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 81796 0.66 0.995331
Target:  5'- aGUuuUUGCGucGCGCGUCGcGUaucGAUGUGCc -3'
miRNA:   3'- -CGuuAACGC--UGCGCGGC-UA---UUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 82742 0.76 0.724762
Target:  5'- uGCGAagGCGAUGaCGCCGAgGAUGUGg -3'
miRNA:   3'- -CGUUaaCGCUGC-GCGGCUaUUGCACg -5'
22911 3' -49.8 NC_005137.2 + 84731 0.66 0.996015
Target:  5'- aGCAcgUGCccgacccgcccGaACGCGCCGA---CGUGUu -3'
miRNA:   3'- -CGUuaACG-----------C-UGCGCGGCUauuGCACG- -5'
22911 3' -49.8 NC_005137.2 + 86872 0.66 0.997138
Target:  5'- -gAAUUGCGAuCGCaCCGuu-GCgGUGCg -3'
miRNA:   3'- cgUUAACGCU-GCGcGGCuauUG-CACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.